Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   NY40_RS01735 Genome accession   NZ_AP014523
Coordinates   332147..333460 (-) Length   437 a.a.
NCBI ID   WP_041049952.1    Uniprot ID   -
Organism   Helicobacter pylori NY40     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327147..338460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS01705 (NY40_0346) nadC 327610..328431 (-) 822 WP_041049947.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NY40_RS01710 (NY40_0347) nadA 328431..329441 (-) 1011 WP_041049949.1 quinolinate synthase NadA -
  NY40_RS01715 (NY40_0348) - 329431..330234 (-) 804 WP_041049950.1 phosphatidylserine decarboxylase -
  NY40_RS01720 (NY40_0349) - 330228..330734 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  NY40_RS01725 (NY40_0350) - 330747..331241 (-) 495 WP_014662432.1 hypothetical protein -
  NY40_RS01730 (NY40_0351) mqnP 331234..332076 (-) 843 WP_231857475.1 menaquinone biosynthesis prenyltransferase MqnP -
  NY40_RS01735 (NY40_0352) comEC/comE3 332147..333460 (-) 1314 WP_041049952.1 ComEC/Rec2 family competence protein Machinery gene
  NY40_RS01740 (NY40_0353) - 333457..334917 (-) 1461 WP_041049954.1 replicative DNA helicase -
  NY40_RS01745 (NY40_0354) - 334928..336328 (-) 1401 WP_041049956.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  NY40_RS01750 (NY40_0355) crdS 336331..337533 (-) 1203 WP_080311582.1 copper-sensing histidine kinase CrdS -
  NY40_RS01755 (NY40_0356) crdR 337499..338140 (-) 642 WP_041049960.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50169.09 Da        Isoelectric Point: 9.9599

>NTDB_id=65777 NY40_RS01735 WP_041049952.1 332147..333460(-) (comEC/comE3) [Helicobacter pylori NY40]
MKDKTFHGAFELLATPKEYLLCGVILSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHWRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLRRSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGFGSLLDHILSMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=65777 NY40_RS01735 WP_041049952.1 332147..333460(-) (comEC/comE3) [Helicobacter pylori NY40]
TTGAAAGATAAAACCTTTCATGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAGTG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACACAATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGCAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTGAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTAAGGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTTGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment