Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   MJX77_RS04170 Genome accession   NZ_CP092454
Coordinates   873858..875426 (+) Length   522 a.a.
NCBI ID   WP_252060610.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 868858..880426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS04150 - 869351..870652 (+) 1302 WP_005301642.1 homoserine dehydrogenase -
  MJX77_RS04155 thrC 870707..871846 (+) 1140 WP_004795157.1 threonine synthase -
  MJX77_RS04160 pbpG 871953..872999 (-) 1047 WP_128825344.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MJX77_RS04165 - 873212..873847 (+) 636 WP_003654436.1 response regulator -
  MJX77_RS04170 pilS 873858..875426 (+) 1569 WP_252060610.1 PAS domain-containing sensor histidine kinase Regulator
  MJX77_RS04175 pilR 875450..876868 (+) 1419 WP_252060611.1 sigma-54 dependent transcriptional regulator Regulator
  MJX77_RS04180 - 876871..878055 (-) 1185 WP_049838282.1 S41 family peptidase -
  MJX77_RS04185 gpmI 878071..879618 (-) 1548 WP_174727225.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence


Protein


Download         Length: 522 a.a.        Molecular weight: 59027.64 Da        Isoelectric Point: 6.4988

>NTDB_id=657713 MJX77_RS04170 WP_252060610.1 873858..875426(+) (pilS) [Acinetobacter sp. AHP123]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYAIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTYPIQIELNNFIKTLLDEDLLDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSSHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=657713 MJX77_RS04170 WP_252060610.1 873858..875426(+) (pilS) [Acinetobacter sp. AHP123]
ATGCAATTTCCATTAAACTCATCGTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ACACCCTGCTCGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATATTATCTGCCTGAGTTTACTTACATTTTCTGTAGGCGAACCAAATCTACAACTCAG
CTTGCTGTATGTTATTGCTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCTG
TCATTGCCGTTATTTACCAACGTTTTGTTGGTAGTTTATTTGACTACAATAATCTAAATACGATTGGTAATAGTGCCTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGCATTGGGCAAATTGCGGTACAGCGCTTTAAACTACTTGAAGCACTGACTTT
CCATCAATCTATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGCTATTTGGTTC
TAGATGAAAACTACGCCATTGTTTTAAGTAATCCAGCTGCCTGCTCTCTGTTAGGGATTCCTCCTCAATTTGCGAGTGAA
AAATATCCTTTAGCGAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTGCAAGAAGGCGATCGATTTAT
TTTTGAGTCTCGGCTATCGGCATATTCTATTAACATTAAAGTGCAACATCTTGTGGTGCCGCAGCAAGCATTGACGCTAC
TCATCTTACAAGATGCACAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCCTTAGGGCAACTTTCAGCCAGC
ATTGCACATGAAATCCGCAACCCCTTAGCAGCCATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTTAGAACAGCA
AAATACTTTACGCCGTATGATTGGTAAGCAAACCAAACGCATCGATAGTATTGTTCAAGACACATTAGGACTGGCTAGCA
GCGAAAGAACTTACCCAATCCAGATTGAATTAAACAATTTCATAAAGACGTTATTAGACGAAGATCTTTTAGATGTTAAA
CATTCTATACAGCTTAAAATTTCCGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTTAGGCAGGTGCTCATTAA
CCTTGTCAGAAATGCTTTACGACATAATGCACCCGATTCCTCCCATGTTCTGATCAACATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGAATGCCCAATAATATATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935