Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   MJX77_RS02815 Genome accession   NZ_CP092454
Coordinates   590259..591059 (-) Length   266 a.a.
NCBI ID   WP_252060512.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585259..596059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS02795 - 586325..587023 (-) 699 WP_252060511.1 tetratricopeptide repeat protein -
  MJX77_RS02800 hisS 587051..588343 (-) 1293 WP_199987235.1 histidine--tRNA ligase -
  MJX77_RS02805 ispG 588340..589455 (-) 1116 WP_004698760.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  MJX77_RS02810 - 589477..590268 (-) 792 WP_005302244.1 helix-turn-helix domain-containing protein -
  MJX77_RS02815 pilF 590259..591059 (-) 801 WP_252060512.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  MJX77_RS02820 rlmN 591075..592310 (-) 1236 WP_004794719.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  MJX77_RS02825 ndk 592434..592865 (-) 432 WP_003654870.1 nucleoside-diphosphate kinase -
  MJX77_RS02830 iscX 592979..593179 (-) 201 WP_003654869.1 Fe-S cluster assembly protein IscX -
  MJX77_RS02835 - 593279..593830 (-) 552 WP_013198979.1 phosphatase PAP2 family protein -
  MJX77_RS02840 - 593855..595144 (-) 1290 WP_252061305.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30129.36 Da        Isoelectric Point: 8.7553

>NTDB_id=657704 MJX77_RS02815 WP_252060512.1 590259..591059(-) (pilF) [Acinetobacter sp. AHP123]
MSTPKLKTVLCMGVAVAFMVSGCQTTHVQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAIEQFRIAGTTLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVHTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=657704 MJX77_RS02815 WP_252060512.1 590259..591059(-) (pilF) [Acinetobacter sp. AHP123]
TTGAGTACTCCAAAGTTAAAAACGGTATTATGTATGGGGGTTGCAGTTGCATTTATGGTAAGTGGTTGCCAGACAACGCA
TGTGCAAAAGAAAGACCCAGAAAAAGCGGTAAAAGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ATTCGGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCAACGGCAAATATGATGATGGGTATTTTA
CTACAGCAAGAAGGTAGTAAGCCGAACTTAGAAAAAGCAGAACATTACTTTAAACGAGCAATTTCATCTGAACCAGATAA
TGCTCAAGCACATAATAACTATGGTACGTACTTGTATCAAATGGAACGCTATAATGATGCGATCGAGCAATTTCGTATTG
CTGGTACAACATTAGGTTATGACCAACGCTATCAGGCGTTAGAAAATCTAGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATACGTTCATACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-133)

Tetratricopeptide repeat (TPR_16)

(149-205)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.609

100

0.936
  pilF Acinetobacter baylyi ADP1

75.385

97.744

0.737