Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG859_RS12095 Genome accession   NZ_CP108266
Coordinates   2821245..2822456 (-) Length   403 a.a.
NCBI ID   WP_405678345.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2816245..2827456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG859_RS12075 (OG859_11990) - 2816514..2816852 (-) 339 WP_328927872.1 P-II family nitrogen regulator -
  OG859_RS12080 (OG859_11995) - 2816849..2818192 (-) 1344 WP_328927871.1 ammonium transporter -
  OG859_RS12085 (OG859_12000) - 2818577..2820091 (-) 1515 WP_405678341.1 hypothetical protein -
  OG859_RS12090 (OG859_12005) - 2820498..2821166 (+) 669 WP_405678343.1 bifunctional DNA primase/polymerase -
  OG859_RS12095 (OG859_12010) pilA 2821245..2822456 (-) 1212 WP_405678345.1 signal recognition particle-docking protein FtsY Machinery gene
  OG859_RS12100 (OG859_12015) - 2822646..2823632 (+) 987 WP_405678347.1 LLM class flavin-dependent oxidoreductase -
  OG859_RS12105 (OG859_12020) - 2823673..2825103 (-) 1431 WP_328927867.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42222.36 Da        Isoelectric Point: 4.4834

>NTDB_id=657702 OG859_RS12095 WP_405678345.1 2821245..2822456(-) (pilA) [Streptomyces sp. NBC_00048]
MDILILAVVIALVAVGVISGLVVSSRKKKQLPPPAPSSTPTITAPPTEPQVGEDAAPTVEEPRRTIEEVGLPEAEAPAPV
EEAEPEAPPAPRIEIPEPTAGRLVRLRARLARSQNTLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVDRLR
ERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEVLLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRALGVPVKLVGLGEGADDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=657702 OG859_RS12095 WP_405678345.1 2821245..2822456(-) (pilA) [Streptomyces sp. NBC_00048]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCGCCGGCACCGTCGAGCACGCCGACCATCACTGCCCCGCCCACCGAACCCCAGGTGGGGGAGG
ACGCCGCACCGACGGTCGAAGAGCCGCGCCGCACCATCGAGGAGGTCGGCCTTCCCGAGGCGGAGGCTCCCGCTCCCGTG
GAGGAGGCCGAGCCCGAGGCGCCGCCCGCGCCCCGGATCGAGATCCCCGAGCCCACCGCCGGCCGCCTGGTCCGGCTGCG
CGCGCGCCTCGCCCGGTCGCAGAACACCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGGGAGCACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGTGTCGCACCGACCCAGGAGCTGGTCGACCGGCTCCGC
GAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCTGGTCGG
CACCGACTTCGACCGCGCCGTGAAGACCGAGAGCGGTGCCGACACGCCGGGCGTCGTGATGGTCGTCGGTGTCAACGGCA
CCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCGGCCGAC
ACCTTCCGCGCGGCGGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTGGGTGCCCGTACCGTACGCGGCCCCGAGGG
CGGCGACCCCGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGTGCCGACGTAGTGCTCATCGACACCG
CGGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGTGTCGTGGAGAAGCACGGCCCGCTG
GACGAGGTCCTGCTCGTGCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCGGAGGTCGTGGA
CATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGTGCGCTCGGCG
TCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCGCCGATGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGACGCCCTG
ATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

38.983

100

0.4