Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OG887_RS36935 Genome accession   NZ_CP108261
Coordinates   8304877..8305236 (+) Length   119 a.a.
NCBI ID   WP_266488452.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00053     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8299877..8310236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG887_RS36905 (OG887_36915) - 8300234..8300656 (+) 423 WP_124720391.1 cupin domain-containing protein -
  OG887_RS36910 (OG887_36920) - 8300781..8300918 (+) 138 WP_266622940.1 hypothetical protein -
  OG887_RS36915 (OG887_36925) - 8301282..8302445 (+) 1164 WP_124720390.1 epoxide hydrolase family protein -
  OG887_RS36920 (OG887_36930) - 8302545..8302943 (-) 399 WP_124720389.1 hypothetical protein -
  OG887_RS36925 (OG887_36935) - 8303213..8303749 (+) 537 WP_124720388.1 hypothetical protein -
  OG887_RS36930 (OG887_36940) - 8303825..8304880 (+) 1056 WP_266488454.1 HAMP domain-containing protein -
  OG887_RS36935 (OG887_36945) micB 8304877..8305236 (+) 360 WP_266488452.1 ATP-binding protein Regulator
  OG887_RS36940 (OG887_36950) - 8305246..8305695 (+) 450 WP_124720387.1 NUDIX hydrolase -
  OG887_RS36945 (OG887_36955) - 8305758..8305859 (+) 102 Protein_7299 transcriptional regulator -
  OG887_RS36950 (OG887_36960) - 8305856..8306242 (+) 387 WP_124720386.1 VOC family protein -
  OG887_RS36955 (OG887_36965) - 8306595..8306987 (+) 393 WP_124720385.1 SAV_915 family protein -
  OG887_RS36960 (OG887_36970) lysA 8306999..8308372 (+) 1374 WP_266792711.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12848.48 Da        Isoelectric Point: 9.4596

>NTDB_id=657675 OG887_RS36935 WP_266488452.1 8304877..8305236(+) (micB) [Streptomyces sp. NBC_00053]
MSGDEDALARVVRNLLDNALRHAATRIDVSLRTLHGTARLVVADDGPGIPGADRERVFDRFTRLDDARARDTGGSGLGLA
IVRDIVTAHHGSTHIEDNRPGTRLIVVLPVEGRIARASR

Nucleotide


Download         Length: 360 bp        

>NTDB_id=657675 OG887_RS36935 WP_266488452.1 8304877..8305236(+) (micB) [Streptomyces sp. NBC_00053]
GTGAGCGGGGACGAGGACGCCCTCGCCCGAGTTGTGCGCAACCTCCTGGACAACGCGCTGCGCCATGCCGCGACCCGCAT
CGACGTCAGCCTCCGTACCCTGCACGGCACCGCACGACTGGTCGTCGCCGACGACGGCCCCGGTATCCCCGGGGCGGACC
GGGAGCGCGTCTTCGACCGGTTCACCCGCCTGGACGACGCCCGCGCCCGGGACACCGGCGGCAGCGGGCTCGGCCTCGCC
ATCGTCCGCGACATCGTCACGGCCCACCACGGCAGCACCCACATCGAGGACAACCGGCCGGGCACCCGGCTGATCGTCGT
GCTGCCGGTCGAGGGGCGGATCGCGCGGGCGTCCCGGTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

37.719

95.798

0.361