Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJJ13_RS13850 Genome accession   NZ_CP092449
Coordinates   2839521..2840150 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli isolate TKEC21-17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834521..2845150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJJ13_RS13835 (MJJ13_13835) helD 2834763..2836817 (-) 2055 WP_001295354.1 DNA helicase IV -
  MJJ13_RS13840 (MJJ13_13840) yccF 2836940..2837386 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MJJ13_RS13845 (MJJ13_13845) yccS 2837396..2839558 (+) 2163 WP_000875061.1 YccS family putative transporter -
  MJJ13_RS13850 (MJJ13_13850) sxy/tfoX 2839521..2840150 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJJ13_RS13855 (MJJ13_13855) sulA 2840369..2840878 (+) 510 WP_111482135.1 SOS-induced cell division inhibitor SulA -
  MJJ13_RS13860 (MJJ13_13860) ompA 2841235..2842275 (+) 1041 WP_000750416.1 porin OmpA -
  MJJ13_RS13865 (MJJ13_13865) matP 2842351..2842803 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MJJ13_RS13870 (MJJ13_13870) ycbZ 2842989..2844749 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=657669 MJJ13_RS13850 WP_000839152.1 2839521..2840150(-) (sxy/tfoX) [Escherichia coli isolate TKEC21-17]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=657669 MJJ13_RS13850 WP_000839152.1 2839521..2840150(-) (sxy/tfoX) [Escherichia coli isolate TKEC21-17]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995