Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG887_RS29730 Genome accession   NZ_CP108261
Coordinates   6599251..6600456 (+) Length   401 a.a.
NCBI ID   WP_124716143.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6594251..6605456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG887_RS29715 (OG887_29725) - 6595260..6596678 (+) 1419 WP_124716146.1 sugar porter family MFS transporter -
  OG887_RS29720 (OG887_29730) - 6596703..6597668 (-) 966 WP_266791921.1 LLM class flavin-dependent oxidoreductase -
  OG887_RS29725 (OG887_29735) - 6597726..6599141 (-) 1416 WP_266791922.1 cytosine permease -
  OG887_RS29730 (OG887_29740) pilA 6599251..6600456 (+) 1206 WP_124716143.1 signal recognition particle-docking protein FtsY Machinery gene
  OG887_RS29735 (OG887_29745) - 6600609..6601268 (-) 660 WP_124716142.1 bifunctional DNA primase/polymerase -
  OG887_RS29740 (OG887_29750) - 6601684..6603156 (+) 1473 WP_266791923.1 hypothetical protein -
  OG887_RS29745 (OG887_29755) - 6603526..6604878 (+) 1353 WP_124716140.1 ammonium transporter -
  OG887_RS29750 (OG887_29760) - 6604875..6605213 (+) 339 WP_124716139.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 42097.07 Da        Isoelectric Point: 4.4644

>NTDB_id=657658 OG887_RS29730 WP_124716143.1 6599251..6600456(+) (pilA) [Streptomyces sp. NBC_00053]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPPGAPAEEAPEA
VEPEAPAAPALEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRER
VRVLGTRTPEGLRALLREELLNLLGTDFDRAVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTF
RAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDE
VLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIG
D

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=657658 OG887_RS29730 WP_124716143.1 6599251..6600456(+) (pilA) [Streptomyces sp. NBC_00053]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGCCCTCCCGGGGCCCCCGCCGAGGAGGCCCCCGAGGCC
GTCGAGCCGGAGGCGCCGGCCGCCCCCGCCCTCGAAGTGCCCGAGCCCACGGCCGGCCGTCTGGTACGGCTGCGCGCCCG
GCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGACAACCTCGACGAGGACACCTGGG
AGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCACCCACCCAGGAACTGGTGGAGCGGCTCCGCGAGCGC
GTCCGTGTGCTCGGCACCCGCACCCCCGAGGGGCTGCGCGCGCTGCTGCGCGAGGAGCTCCTCAACCTGCTCGGCACCGA
CTTCGACCGCGCGGTCAAGACGGAGAGCGGCCTCGACACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGAACCGGCA
AGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACCTTC
CGGGCGGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGGCCCGAGGGCGGCGA
CCCCGCCTCGATCGCCTTCGACGCGGTGAAGGAGGGCATCGCCGAGGGCGCCGATGTGGTCCTCATCGACACCGCCGGAC
GGCTGCACACGAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCGCTCGACGAG
GTGCTGCTCGTCCTCGACGCCACGACCGGGCAGAACGGTCTGGTCCAGGCCCGGGTGTTCGCCGAGGTCGTGGACATCAC
CGGCATCGTGCTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGGGCGTGCCGG
TGAAGCTCGTCGGTCTCGGCGAGGGACCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATCGGG
GACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(115-180)

SRP54-type protein, GTPase domain (SRP54)

(202-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.848

91.771

0.384