Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LXM97_RS09500 Genome accession   NZ_CP092447
Coordinates   1972118..1972834 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain SYN     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967118..1977834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM97_RS09470 (LXM97_09470) - 1967334..1967960 (+) 627 WP_000522383.1 nitroreductase family protein -
  LXM97_RS09475 (LXM97_09475) - 1968321..1969106 (+) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  LXM97_RS13420 - 1969705..1969839 (-) 135 WP_001823225.1 delta-lysin family phenol-soluble modulin -
  LXM97_RS09485 (LXM97_09485) agrB 1970075..1970644 (+) 570 WP_001105712.1 accessory gene regulator AgrB -
  LXM97_RS09490 (LXM97_09490) - 1970641..1970781 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  LXM97_RS09495 (LXM97_09495) - 1970806..1972099 (+) 1294 Protein_1833 GHKL domain-containing protein -
  LXM97_RS09500 (LXM97_09500) agrA 1972118..1972834 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  LXM97_RS09505 (LXM97_09505) - 1972906..1973013 (+) 108 WP_031844951.1 hypothetical protein -
  LXM97_RS09510 (LXM97_09510) - 1973201..1974160 (-) 960 WP_001253300.1 carbohydrate kinase -
  LXM97_RS09515 (LXM97_09515) - 1974157..1975641 (-) 1485 WP_000141422.1 sucrose-6-phosphate hydrolase -
  LXM97_RS09520 (LXM97_09520) - 1975790..1976740 (-) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=657650 LXM97_RS09500 WP_000688492.1 1972118..1972834(+) (agrA) [Staphylococcus aureus strain SYN]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=657650 LXM97_RS09500 WP_000688492.1 1972118..1972834(+) (agrA) [Staphylococcus aureus strain SYN]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACGTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1