Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG887_RS18050 Genome accession   NZ_CP108261
Coordinates   4064508..4065920 (+) Length   470 a.a.
NCBI ID   WP_124719461.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4059508..4070920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG887_RS18035 (OG887_18050) - 4060427..4061380 (-) 954 WP_124719458.1 Ppx/GppA phosphatase family protein -
  OG887_RS18040 (OG887_18055) - 4061421..4062290 (+) 870 WP_124719459.1 hypothetical protein -
  OG887_RS18045 (OG887_18060) - 4062399..4064312 (-) 1914 WP_266790530.1 hypothetical protein -
  OG887_RS18050 (OG887_18065) radA/sms 4064508..4065920 (+) 1413 WP_124719461.1 DNA repair protein RadA Machinery gene
  OG887_RS18055 (OG887_18070) disA 4066001..4067125 (+) 1125 WP_093547386.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG887_RS18060 (OG887_18075) - 4067231..4067989 (-) 759 WP_124720124.1 hypothetical protein -
  OG887_RS18065 (OG887_18080) - 4068240..4068887 (+) 648 WP_266492542.1 phosphatase PAP2 family protein -
  OG887_RS18070 (OG887_18085) - 4069032..4069934 (+) 903 WP_124719462.1 A/G-specific adenine glycosylase -
  OG887_RS18075 (OG887_18090) - 4070111..4070725 (+) 615 WP_124719463.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49507.63 Da        Isoelectric Point: 8.4954

>NTDB_id=657628 OG887_RS18050 WP_124719461.1 4064508..4065920(+) (radA/sms) [Streptomyces sp. NBC_00053]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRITSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=657628 OG887_RS18050 WP_124719461.1 4064508..4065920(+) (radA/sms) [Streptomyces sp. NBC_00053]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCAGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGCCTCGTGCCGGGTGCCGTGGTGCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGCACGCTTTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGACCTGTCCGCGGTT
CTCGGCCATCTGGACGCCGTCAAGCCCTCGCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAGGG
GGCGCCGGGCGGCATGGCGCAGGTCAGGGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTCACCAAGGAGGGGGCGATCGCGGGCCCCCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGCCATGCCCGCCTGCGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGGCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCCCAG
ATCCCTTCGCCCCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGTGG
CCGGATCACCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGTGCCGCGAGCGACACCCCCCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGT
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCT
GGTTCCGACCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGATGCGCTGAGAGTCC
TCCCACGCCGGTCTCGTGCACAGGCCCCCCAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

43.046

96.383

0.415
  radA Streptococcus pneumoniae D39

43.046

96.383

0.415
  radA Streptococcus pneumoniae R6

43.046

96.383

0.415
  radA Streptococcus pneumoniae TIGR4

43.046

96.383

0.415
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406