Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU31_RS28660 Genome accession   NZ_CP108259
Coordinates   6345219..6346013 (-) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_00055     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6340219..6351013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS28645 (OHU31_28675) - 6340272..6341141 (+) 870 WP_327421635.1 GNAT family N-acetyltransferase -
  OHU31_RS28650 (OHU31_28680) - 6341202..6343061 (+) 1860 WP_327421634.1 IucA/IucC family siderophore biosynthesis protein -
  OHU31_RS28655 (OHU31_28685) - 6343112..6345082 (+) 1971 WP_030927138.1 ATP-dependent DNA helicase -
  OHU31_RS28660 (OHU31_28690) dinR/lexA 6345219..6346013 (-) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OHU31_RS28665 (OHU31_28695) nrdR 6346556..6347068 (+) 513 WP_030927142.1 transcriptional regulator NrdR -
  OHU31_RS28670 (OHU31_28700) - 6347229..6350132 (+) 2904 WP_327421632.1 vitamin B12-dependent ribonucleotide reductase -
  OHU31_RS28675 (OHU31_28705) - 6350342..6350878 (-) 537 WP_327421631.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=657582 OHU31_RS28660 WP_030927140.1 6345219..6346013(-) (dinR/lexA) [Streptomyces sp. NBC_00055]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=657582 OHU31_RS28660 WP_030927140.1 6345219..6346013(-) (dinR/lexA) [Streptomyces sp. NBC_00055]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCAGAGCCTGCGCGCCCAGCGCGCTCGCTCCCCGGTCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGATACCCA
CCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACACAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCGGAG
GAATCGGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCTGCGATCTGCGACGGGGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371