Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU31_RS13080 Genome accession   NZ_CP108259
Coordinates   2875384..2877309 (+) Length   641 a.a.
NCBI ID   WP_030925845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00055     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870384..2882309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS13065 (OHU31_13080) - 2871669..2871974 (+) 306 WP_030925852.1 hypothetical protein -
  OHU31_RS13070 (OHU31_13085) - 2872035..2873480 (+) 1446 WP_030925849.1 FGGY family carbohydrate kinase -
  OHU31_RS13075 (OHU31_13090) rcrP 2873651..2875384 (+) 1734 WP_030925847.1 ABC transporter ATP-binding protein Regulator
  OHU31_RS13080 (OHU31_13095) rcrQ 2875384..2877309 (+) 1926 WP_030925845.1 ABC transporter ATP-binding protein Regulator
  OHU31_RS13085 (OHU31_13100) - 2877326..2878453 (-) 1128 WP_327423463.1 RNA polymerase sigma factor -
  OHU31_RS13090 (OHU31_13105) dnaG 2878679..2880583 (-) 1905 WP_405666123.1 DNA primase -
  OHU31_RS13095 (OHU31_13110) - 2880734..2881993 (-) 1260 WP_030925839.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69110.57 Da        Isoelectric Point: 5.4262

>NTDB_id=657539 OHU31_RS13080 WP_030925845.1 2875384..2877309(+) (rcrQ) [Streptomyces sp. NBC_00055]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATERASLYAMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRLPAGT
TKEQAVEGLRKTNSALADLLSGVDFTPGQGIDFDAVGHVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRAGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=657539 OHU31_RS13080 WP_030925845.1 2875384..2877309(+) (rcrQ) [Streptomyces sp. NBC_00055]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
ACTGCTGAAGCGCTTCGCGACGGAGAGGGCCTCGCTGTACGCGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGCGTCATCGGCCGGCGGCTGCCCGCTGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGCCTTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCAGGGCATCGACTTCGATGCGGTGGGCCACGTACTGCTGACGGCGCTGGCGGTCTACGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGTGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTCGCGCTGGTCACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGACTGCGGGTCGCGTCGGGCGCGTTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAACTGC
TGGACGCCGAGGAGCAGGGCCCCGATCCGGTGACAGGTGAGCGCCCGGCCGATCTGCTCGGCAGTGTCTCTCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAGCGTCGAACCGGGCCACACCGTCGCGAT
CGTCGGCCCGACCGGGGCCGGCAAGACGACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGATGAGCTGCGGGCAGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCTCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTCTCGGACCCCGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCACAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.75

82.371

0.36