Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   MI302_RS04590 Genome accession   NZ_CP092445
Coordinates   737024..738907 (-) Length   627 a.a.
NCBI ID   WP_239726350.1    Uniprot ID   -
Organism   Thermus sp. NEB1569     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732024..743907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MI302_RS04550 (MI302_04550) - 732723..733379 (+) 657 WP_239726346.1 chromosome segregation protein ScpA -
  MI302_RS04555 (MI302_04555) - 733395..733949 (+) 555 WP_239726347.1 Uma2 family endonuclease -
  MI302_RS04560 (MI302_04560) - 733969..734229 (-) 261 WP_239726348.1 hypothetical protein -
  MI302_RS04565 (MI302_04565) - 734290..734796 (-) 507 WP_008633626.1 IS630 family transposase -
  MI302_RS04570 (MI302_04570) - 734835..735362 (-) 528 WP_019551665.1 winged helix-turn-helix domain-containing protein -
  MI302_RS04575 (MI302_04575) - 735573..735932 (-) 360 WP_126204502.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MI302_RS04580 (MI302_04580) comZ 736145..736330 (-) 186 WP_239726349.1 hypothetical protein Machinery gene
  MI302_RS04585 (MI302_04585) - 736332..737075 (-) 744 WP_135260897.1 transposase -
  MI302_RS04590 (MI302_04590) comZ 737024..738907 (-) 1884 WP_239726350.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  MI302_RS04595 (MI302_04595) pilA/pilA3 738918..739619 (-) 702 WP_239726351.1 PilW family protein Machinery gene
  MI302_RS04600 (MI302_04600) pilA/pilA2 739637..740224 (-) 588 WP_239726352.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MI302_RS04605 (MI302_04605) - 740221..740694 (-) 474 WP_239726353.1 GspH/FimT family protein -
  MI302_RS04610 (MI302_04610) pilA/pilA1 740748..741218 (-) 471 WP_239726354.1 GspH/FimT family protein Machinery gene
  MI302_RS04615 (MI302_04615) - 741285..742475 (+) 1191 WP_239726355.1 thiolase family protein -
  MI302_RS04620 (MI302_04620) - 742477..742785 (-) 309 WP_019551627.1 DUF503 domain-containing protein -
  MI302_RS04625 (MI302_04625) - 742842..743201 (-) 360 WP_038030453.1 DUF86 domain-containing protein -
  MI302_RS04630 (MI302_04630) - 743179..743490 (-) 312 WP_028493102.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 66958.21 Da        Isoelectric Point: 8.1392

>NTDB_id=657520 MI302_RS04590 WP_239726350.1 737024..738907(-) (comZ) [Thermus sp. NEB1569]
MNTKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAVLFQQYVWREQRGQGGGGPGCF
TPLVTGLDLDRNGTLIPFTNNQLVLAEDEAVMDAFGNPVGRYRVVLYKDAQDGQLFTLVSQGTSSGAKATVQATFRISNT
GYLEQAIFAGTGQANKWLNGGATIRGGIYVVGSPSDPDQTVIKANGNFALYNWYNLNDNDYSGIASRVESGYREVRDLCA
SLRVQYGKISVGGSTEIGEPTNKVKGVFVGRGAQDITGDVCQDQDKKGVCTEAMGGFDLSNPPPFPTLDAKLDSDACSAY
PTWRNCLQNRAALRIQRLENRVSIATPLGVNLDSCLQALQSGTLTLDNKDVNCTFIRPDGSRGGFKYTYEDGKGLLQVFG
DVVLEGLNLVLNQPTDYQASSGSAKSATFAVLAKDGAGGNLDINGSLLPDASFGSFPGHALGLVVEKNLYQRGQYVMAPL
YAGGTFRVVQDKVLFGSVIANEFCTTSAGGQNTGNQGGNKNNKNPPFRIFNAYPLDKPKEKGALGELWKNTRRPLPSYPC
PWRNWSPCSRHGSKPACQKGRENPAGPGPSPTSASFSSTWSAPSWASPANACAGNWPATLGSASASV

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=657520 MI302_RS04590 WP_239726350.1 737024..738907(-) (comZ) [Thermus sp. NEB1569]
ATGAACACGAAAGGCATCGCCCTGGTCGCCACTTTGGCCCTGATGGTGGTCATCGCCCTCCTGGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTTTGGACCACCCGCAACGACACCACCTCGGTCCAGGCCTTCTACGCCGCCGAGGCCGGGCTCC
AGAAGTACAAGGCCGTCCTCTTCCAGCAGTATGTCTGGCGGGAGCAACGGGGCCAGGGGGGAGGAGGGCCTGGCTGTTTC
ACCCCCCTGGTAACTGGCCTGGACCTGGACCGGAACGGGACCCTAATCCCCTTCACCAACAACCAGTTGGTCCTGGCCGA
GGACGAGGCGGTGATGGACGCCTTCGGCAACCCCGTGGGCCGGTATCGGGTGGTCCTTTACAAAGACGCCCAAGACGGCC
AGCTTTTCACCCTGGTCTCCCAGGGCACCTCCTCCGGCGCCAAGGCCACGGTCCAGGCCACCTTCCGCATCAGCAACACG
GGCTACCTGGAGCAGGCCATCTTCGCAGGAACGGGCCAGGCCAATAAGTGGCTGAACGGGGGGGCCACCATCCGGGGCGG
AATCTACGTGGTGGGAAGCCCAAGTGATCCCGACCAAACGGTCATAAAGGCCAACGGAAACTTTGCCCTCTACAACTGGT
ATAACCTGAACGACAACGACTACTCCGGGATCGCCAGCCGGGTGGAATCCGGCTACCGGGAGGTCCGAGACCTCTGCGCG
AGCCTCCGGGTGCAGTACGGCAAGATCTCCGTTGGGGGGAGCACCGAGATCGGCGAGCCCACCAACAAGGTGAAAGGGGT
GTTCGTGGGCCGGGGCGCCCAGGACATTACCGGGGATGTATGCCAGGACCAGGACAAGAAAGGGGTCTGCACCGAGGCCA
TGGGGGGCTTTGACCTCTCCAATCCCCCGCCTTTCCCCACCCTGGATGCCAAGCTGGACTCCGACGCCTGCTCCGCTTAC
CCCACCTGGCGGAACTGCCTCCAGAACAGGGCCGCCCTCAGGATTCAGCGCCTAGAGAACCGGGTGTCCATCGCCACCCC
CCTGGGTGTGAACCTGGATTCCTGCCTCCAGGCCCTGCAGTCCGGCACCCTGACCCTAGATAACAAAGACGTGAACTGCA
CTTTCATCCGCCCGGACGGAAGCCGGGGAGGGTTCAAGTACACCTATGAGGACGGGAAGGGGCTTTTGCAGGTATTCGGT
GACGTGGTCCTGGAGGGGCTTAACCTGGTCCTGAACCAGCCCACGGACTACCAGGCCAGCTCGGGGAGCGCCAAGAGCGC
TACTTTCGCCGTGCTGGCGAAGGATGGGGCGGGCGGCAACCTGGACATCAACGGCAGCCTCCTCCCCGACGCCAGCTTTG
GCTCCTTCCCCGGCCACGCCTTGGGCCTTGTGGTGGAGAAGAACCTCTACCAGCGGGGCCAGTACGTGATGGCCCCCCTC
TATGCGGGCGGGACCTTCCGGGTGGTGCAGGACAAGGTGCTTTTCGGTTCTGTCATCGCCAACGAGTTTTGCACCACCAG
CGCTGGCGGCCAAAACACCGGTAATCAAGGCGGAAATAAAAATAATAAGAACCCCCCCTTTCGGATATTCAATGCATACC
CCCTTGACAAGCCAAAGGAAAAGGGGGCGCTTGGTGAGCTGTGGAAGAACACCAGACGCCCCCTTCCATCCTACCCCTGC
CCCTGGAGGAACTGGTCCCCCTGCTCCAGGCATGGCTCCAAGCCCGCTTGCCAGAAGGGGAGAGAAAACCCGGCAGGCCC
AGGACCTTCTCCGACCTCAGCCTCTTTCTCTTCCACCTGGTCCGCGCCCTCCTGGGCTTCTCCAGCGAACGCATGCGCCG
GGAACTGGCCCGCAACCCTAGGCTCCGCAAGCGCCTCGGTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

77.071

82.775

0.638