Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU31_RS00480 Genome accession   NZ_CP108259
Coordinates   103450..103671 (-) Length   73 a.a.
NCBI ID   WP_405665038.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00055     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98450..108671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS00450 (OHU31_00455) - 99001..100206 (-) 1206 WP_327424944.1 hypothetical protein -
  OHU31_RS00455 (OHU31_00460) - 100542..100808 (+) 267 WP_327424943.1 hypothetical protein -
  OHU31_RS00460 (OHU31_00465) - 100862..101269 (-) 408 WP_327424942.1 hypothetical protein -
  OHU31_RS00465 (OHU31_00470) - 101386..101508 (-) 123 WP_030927574.1 ribosomal protein bL36 -
  OHU31_RS00470 (OHU31_00480) rpmG 101836..102000 (-) 165 WP_327424941.1 50S ribosomal protein L33 -
  OHU31_RS00475 (OHU31_00485) - 102405..103037 (-) 633 WP_327424940.1 M15 family metallopeptidase -
  OHU31_RS00480 (OHU31_00490) dinR/lexA 103450..103671 (-) 222 WP_405665038.1 hypothetical protein Regulator
  OHU31_RS00485 (OHU31_00495) - 103668..103910 (-) 243 WP_405665040.1 hypothetical protein -
  OHU31_RS00490 (OHU31_00500) - 104108..105025 (+) 918 WP_405665041.1 aminoglycoside phosphotransferase family protein -
  OHU31_RS00495 (OHU31_00505) - 105575..105727 (-) 153 WP_158715992.1 hypothetical protein -
  OHU31_RS00500 (OHU31_00510) - 105828..106202 (-) 375 WP_405665043.1 YybH family protein -
  OHU31_RS00505 (OHU31_00515) - 107230..107817 (+) 588 WP_327424933.1 TetR/AcrR family transcriptional regulator -
  OHU31_RS00510 (OHU31_00520) - 108226..108624 (-) 399 WP_319740543.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7999.25 Da        Isoelectric Point: 11.8064

>NTDB_id=657520 OHU31_RS00480 WP_405665038.1 103450..103671(-) (dinR/lexA) [Streptomyces sp. NBC_00055]
MSRDGVVSPRQESILRVIRNSIIDCGEGPTVRQIGGRVGLPSTSSVVYQLGRLEGLGLISRSCRRWRSCRLGT

Nucleotide


Download         Length: 222 bp        

>NTDB_id=657520 OHU31_RS00480 WP_405665038.1 103450..103671(-) (dinR/lexA) [Streptomyces sp. NBC_00055]
ATGAGCCGAGACGGTGTGGTGTCACCGAGGCAGGAGTCGATCCTCAGGGTCATCCGGAACTCGATCATCGATTGTGGTGA
GGGGCCGACCGTGCGGCAGATCGGCGGGCGCGTCGGCCTACCCAGCACCAGCTCCGTCGTTTACCAGCTCGGCCGCCTCG
AAGGACTGGGCCTCATCAGCCGCAGCTGCCGCCGCTGGCGCTCGTGCCGGCTCGGCACCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(8-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.077

89.041

0.384