Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I9P40_RS14830 Genome accession   NZ_CP092442
Coordinates   3076539..3077153 (-) Length   204 a.a.
NCBI ID   WP_198801979.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain Sb-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071539..3082153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9P40_RS14815 (I9P40_17190) helD 3071763..3073817 (-) 2055 WP_198801980.1 DNA helicase IV -
  I9P40_RS14820 (I9P40_17185) - 3073943..3074389 (+) 447 WP_003831998.1 YccF domain-containing protein -
  I9P40_RS14825 (I9P40_17180) yccS 3074408..3076561 (+) 2154 WP_048236463.1 YccS family putative transporter -
  I9P40_RS14830 (I9P40_17175) sxy/tfoX 3076539..3077153 (-) 615 WP_198801979.1 TfoX/Sxy family DNA transformation protein Regulator
  I9P40_RS14835 (I9P40_17170) sulA 3077371..3077880 (+) 510 WP_198801978.1 SOS-induced cell division inhibitor SulA -
  I9P40_RS14840 (I9P40_17165) ompA 3078238..3079296 (+) 1059 WP_198801977.1 porin OmpA -
  I9P40_RS14845 (I9P40_17160) matP 3079385..3079837 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  I9P40_RS14850 (I9P40_17155) - 3080023..3081783 (+) 1761 WP_128611773.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23240.61 Da        Isoelectric Point: 8.2305

>NTDB_id=657503 I9P40_RS14830 WP_198801979.1 3076539..3077153(-) (sxy/tfoX) [Citrobacter portucalensis strain Sb-2]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVEGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=657503 I9P40_RS14830 WP_198801979.1 3076539..3077153(-) (sxy/tfoX) [Citrobacter portucalensis strain Sb-2]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGTTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGGGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGAGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676