Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHB53_RS27275 Genome accession   NZ_CP108258
Coordinates   5970793..5971794 (+) Length   333 a.a.
NCBI ID   WP_266671507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00056     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5965793..5976794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB53_RS27250 (OHB53_27200) - 5966273..5966944 (+) 672 WP_266676422.1 TetR/AcrR family transcriptional regulator -
  OHB53_RS27255 (OHB53_27205) - 5967099..5968583 (+) 1485 WP_266671513.1 MFS transporter -
  OHB53_RS27260 (OHB53_27210) - 5968605..5969108 (-) 504 WP_116513600.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHB53_RS27265 (OHB53_27215) - 5969226..5969987 (+) 762 WP_266676420.1 dioxygenase -
  OHB53_RS27270 (OHB53_27220) - 5970066..5970638 (-) 573 WP_382475174.1 GNAT family N-acetyltransferase -
  OHB53_RS27275 (OHB53_27225) rpoS 5970793..5971794 (+) 1002 WP_266671507.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHB53_RS27280 (OHB53_27230) - 5971837..5972832 (-) 996 WP_366121409.1 WYL domain-containing protein -
  OHB53_RS27285 (OHB53_27235) - 5972986..5974488 (+) 1503 WP_266671503.1 MFS transporter -
  OHB53_RS27290 (OHB53_27240) - 5974571..5975830 (-) 1260 WP_266671501.1 extracellular solute-binding protein -
  OHB53_RS27295 (OHB53_27245) - 5975902..5976549 (+) 648 WP_266671499.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37246.10 Da        Isoelectric Point: 5.0689

>NTDB_id=657485 OHB53_RS27275 WP_266671507.1 5970793..5971794(+) (rpoS) [Streptomyces sp. NBC_00056]
MATRAVARRKSAAGETDGARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEAESEAAG
KASREELEALVAASERAKDVFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPEEIAAELESKPERVVDVLDWARDPVSLNMPVDDEGETQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=657485 OHB53_RS27275 WP_266671507.1 5970793..5971794(+) (rpoS) [Streptomyces sp. NBC_00056]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCGCCGGCGAGACCGACGGCGCACGCAGTGTTCGCGCCGTAGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTGGACGCCGCCAAGGAAG
TCGAACTTTCCCAGACCATCGAGGCGGGCGTGTACGCCCGGCAGATCCTCGACGGCGAGGCGGAGAGCGAAGCCGCGGGC
AAGGCGTCCCGCGAGGAGCTCGAAGCGCTCGTCGCCGCGAGTGAGCGGGCCAAGGACGTCTTCATCAAGTCCAATCTGCG
CCTGGTCGTGGCCGTCGCGCGCCGTTACCCGAGGAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGGAACGCGGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACATACGCGACGTGGTGGATCCGGCAGGCC
ATCACGCGCTCGATAGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAACTGGGCCGCATCCGGCG
CGTACAGCGCGAGTTCAACCGGAAGAACGGGCGGGATCCCGAGCCCGAGGAGATCGCCGCCGAGCTCGAATCCAAGCCCG
AGCGCGTCGTCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGAGGGCGAGACCCAG
TTCGGCGACCTCCTGGAGGACACGTCCGCCGTGTCGCCCGAGCAGTCCGTCCTCACGCTGCTGCGCAGCGAGGAGCTGGA
CGACCTCATCGGACGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGGATCGACGACGGCCGTGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTGACCCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTTCTCGAGCTG
AAGAAGCTGGCGCGGGACACCGGGTTCGATGCCGCCGCGTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.867

90.39

0.36