Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG953_RS12785 Genome accession   NZ_CP108256
Coordinates   2765628..2766839 (-) Length   403 a.a.
NCBI ID   WP_405684251.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760628..2771839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS12765 (OG953_12745) - 2760842..2761180 (-) 339 WP_093899110.1 P-II family nitrogen regulator -
  OG953_RS12770 (OG953_12750) - 2761177..2762535 (-) 1359 WP_405684246.1 ammonium transporter -
  OG953_RS12775 (OG953_12755) - 2762905..2764380 (-) 1476 WP_405684248.1 hypothetical protein -
  OG953_RS12780 (OG953_12760) - 2764803..2765462 (+) 660 WP_405684250.1 bifunctional DNA primase/polymerase -
  OG953_RS12785 (OG953_12765) pilA 2765628..2766839 (-) 1212 WP_405684251.1 signal recognition particle-docking protein FtsY Machinery gene
  OG953_RS12790 (OG953_12770) - 2766949..2768334 (+) 1386 Protein_2549 purine-cytosine permease family protein -
  OG953_RS12795 (OG953_12775) - 2768393..2769358 (+) 966 WP_405684252.1 LLM class flavin-dependent oxidoreductase -
  OG953_RS12800 (OG953_12780) - 2769435..2770853 (-) 1419 WP_405684254.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42358.34 Da        Isoelectric Point: 4.4406

>NTDB_id=657379 OG953_RS12785 WP_405684251.1 2765628..2766839(-) (pilA) [Streptomyces sp. NBC_00057]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPPSAEAPAEEAP
EAVEPEAPAAPVLEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLR
ERVRVLGTRTPEGLRSLLREELLTLLGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=657379 OG953_RS12785 WP_405684251.1 2765628..2766839(-) (pilA) [Streptomyces sp. NBC_00057]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCGCCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGTCCCCCCTCGGCCGAGGCTCCCGCCGAGGAAGCCCCC
GAGGCCGTCGAGCCGGAGGCGCCCGCCGCCCCCGTCCTCGAGGTGCCCGAGCCCACTGCGGGCCGTCTGGTGCGGCTGCG
TGCCCGGCTCGCCCGCTCGCAGAACTCCCTCGGTAAGGGGCTGCTCACGCTCCTGTCCCGCGACAACCTCGATGAGGACA
CCTGGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCACCCACCCAGGAACTGGTGGAGCGGCTCCGT
GAACGCGTCCGCGTTCTCGGCACCCGTACCCCCGAAGGGCTGCGCTCGCTGCTGCGCGAGGAGCTCCTCACCCTGCTCGG
CACCGACTTCGACCGTGCGGTCAAGACGGAGAGCGGTGTCGACACCCCCGGTGTCGTGATGGTCGTCGGCGTCAACGGAA
CCGGCAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCCGCCGAC
ACCTTCCGGGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGAGGACCCGAGGG
CGGCGACCCGGCGTCGATCGCCTTCGACGCGGTGAAGGAAGGGATCGCCGAGGGCGCCGATGTCGTCCTCATCGACACCG
CGGGACGGCTGCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGACCGCTC
GACGAGATCCTGCTCGTCCTCGACGCCACGACCGGACAGAACGGTCTGGTGCAGGCCCGGGTGTTCGCCGAGGTCGTCGA
CATCACCGGCATCGTGCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGTGAACTGGGCG
TACCGGTGAAGCTGGTCGGTCTCGGCGAGGGACCGGACGACCTGGCTCCGTTCGAGCCGGAGGCATTCGTGGACGCCCTG
ATCGGAGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.169

90.819

0.392