Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG953_RS11810 Genome accession   NZ_CP108256
Coordinates   2528686..2529480 (+) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2523686..2534480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS11795 (OG953_11775) - 2523868..2524404 (+) 537 WP_405684038.1 TerD family protein -
  OG953_RS11800 (OG953_11780) - 2524569..2527472 (-) 2904 WP_405684039.1 vitamin B12-dependent ribonucleotide reductase -
  OG953_RS11805 (OG953_11785) nrdR 2527635..2528147 (-) 513 WP_405684040.1 transcriptional regulator NrdR -
  OG953_RS11810 (OG953_11790) dinR/lexA 2528686..2529480 (+) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OG953_RS11815 (OG953_11795) - 2529564..2531534 (-) 1971 WP_405684042.1 ATP-dependent DNA helicase -
  OG953_RS11820 (OG953_11800) - 2531585..2533489 (-) 1905 WP_405684043.1 IucA/IucC family protein -
  OG953_RS11825 (OG953_11805) - 2533550..2534356 (-) 807 WP_405684045.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=657374 OG953_RS11810 WP_093898912.1 2528686..2529480(+) (dinR/lexA) [Streptomyces sp. NBC_00057]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=657374 OG953_RS11810 WP_093898912.1 2528686..2529480(+) (dinR/lexA) [Streptomyces sp. NBC_00057]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCGCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCAGAGCCCGTGCGCCCGGCGCGCTCGTTGCCCGGCCGACCTCCAGGTATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGCTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGTCGCGACCCACATCGCCCGCGGGCGTACGAGGTCCGCGGTTCGGACCAACCCAGCTCGCAGCCCA
CCGACACAACGGGAAAGCCCGCAGCGTCGTATGTGCCGCTGGTCGGCCGGATCGCAGCCGGTGGCCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGTGACGGAGAACTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCGACGATTCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375