Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H7K53_RS15805 Genome accession   NZ_AP022077
Coordinates   3271865..3272227 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain WP4-W18-ESBL-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3266865..3277227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K53_RS15795 (WP4W18E11_30990) - 3269143..3271221 (-) 2079 WP_119027261.1 methyl-accepting chemotaxis protein -
  H7K53_RS15800 (WP4W18E11_31000) - 3271268..3271804 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  H7K53_RS15805 (WP4W18E11_31010) pilH 3271865..3272227 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  H7K53_RS15810 (WP4W18E11_31020) pilG 3272251..3272634 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  H7K53_RS15815 (WP4W18E11_31030) - 3272917..3273555 (+) 639 WP_004739833.1 hypothetical protein -
  H7K53_RS15820 (WP4W18E11_31040) - 3273615..3274733 (+) 1119 WP_119027260.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=65737 H7K53_RS15805 WP_000101096.1 3271865..3272227(-) (pilH) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=65737 H7K53_RS15805 WP_000101096.1 3271865..3272227(-) (pilH) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment