Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHU26_RS08760 Genome accession   NZ_CP108249
Coordinates   2062226..2063443 (-) Length   405 a.a.
NCBI ID   WP_327361539.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057226..2068443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU26_RS08740 (OHU26_08715) - 2057565..2057903 (-) 339 WP_266636370.1 P-II family nitrogen regulator -
  OHU26_RS08745 (OHU26_08720) - 2057900..2059246 (-) 1347 WP_266636372.1 ammonium transporter -
  OHU26_RS08750 (OHU26_08725) - 2059563..2061068 (-) 1506 WP_405700698.1 hypothetical protein -
  OHU26_RS08755 (OHU26_08730) - 2061476..2062144 (+) 669 WP_266636374.1 bifunctional DNA primase/polymerase -
  OHU26_RS08760 (OHU26_08735) pilA 2062226..2063443 (-) 1218 WP_327361539.1 signal recognition particle-docking protein FtsY Machinery gene
  OHU26_RS08765 (OHU26_08740) - 2063587..2065071 (+) 1485 WP_405700701.1 cytosine permease -
  OHU26_RS08770 (OHU26_08745) - 2065135..2066121 (+) 987 WP_362635611.1 LLM class flavin-dependent oxidoreductase -
  OHU26_RS08775 (OHU26_08750) - 2066171..2067607 (-) 1437 WP_266636382.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42393.55 Da        Isoelectric Point: 4.4015

>NTDB_id=657294 OHU26_RS08760 WP_327361539.1 2062226..2063443(-) (pilA) [Streptomyces sp. NBC_00069]
MDILILAVVIALVAVGVISGLVVGSRKKKQLPPSAPPSTPTLTAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAAAPE
APAVVEPEAPAAPEIEVPEPTAGRLIRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=657294 OHU26_RS08760 WP_327361539.1 2062226..2063443(-) (pilA) [Streptomyces sp. NBC_00069]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCGGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGCCCAGCACACCGACCCTCACTGCCCCGCCCGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAACCCCGCCGCACCATCGAGGAGGTCGGCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGCAGTCGTCGAACCCGAGGCTCCGGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGATCCG
GCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCGGTGAAGACCGAGAGCGGCGTGGACACCCCGGGCGTCGTGATGGTCGTGGGGGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTCGTCGCCGACGGCCGCTCCGTGGTGCTCGGTGCC
GCCGACACCTTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTCGGCGCGCGCACCGTACGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCTGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCATCGGCCTCGGCGAGGGCCCGGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)

SRP54-type protein, GTPase domain (SRP54)

(206-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.709

100

0.405