Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJO57_RS07325 Genome accession   NZ_CP092417
Coordinates   1719058..1719570 (+) Length   170 a.a.
NCBI ID   WP_252020718.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1714058..1724570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS07295 (MJO57_07265) - 1714327..1714467 (-) 141 WP_252024119.1 hypothetical protein -
  MJO57_RS07300 (MJO57_07270) - 1714466..1714675 (+) 210 WP_252017356.1 DUF6444 domain-containing protein -
  MJO57_RS07305 (MJO57_07275) ltrA 1715241..1716503 (+) 1263 WP_252017357.1 group II intron reverse transcriptase/maturase -
  MJO57_RS07310 (MJO57_07280) - 1716500..1717396 (+) 897 WP_252024121.1 IS66 family transposase -
  MJO57_RS07315 (MJO57_07285) - 1717457..1718497 (+) 1041 WP_252024123.1 IS1595 family transposase -
  MJO57_RS07320 (MJO57_07290) - 1718470..1719030 (+) 561 WP_252024125.1 transposase -
  MJO57_RS07325 (MJO57_07295) ssb 1719058..1719570 (+) 513 WP_252020718.1 single-stranded DNA-binding protein Machinery gene
  MJO57_RS07330 (MJO57_07300) - 1719772..1721301 (-) 1530 WP_252024127.1 transposase -
  MJO57_RS07335 (MJO57_07305) - 1721467..1721790 (+) 324 WP_066017883.1 hypothetical protein -
  MJO57_RS07340 (MJO57_07310) - 1721860..1723107 (+) 1248 WP_252020720.1 hypothetical protein -
  MJO57_RS07345 (MJO57_07315) - 1723214..1723474 (+) 261 WP_066017891.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19246.29 Da        Isoelectric Point: 8.4795

>NTDB_id=657289 MJO57_RS07325 WP_252020718.1 1719058..1719570(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
MSRGVNKVILVGHVGQDPVVRYTPGGEAVANISLATSEKWKDRNGQPQERTEWHRIVTFGKLADIAQQLVRKGSKLYIEG
KLQTRKWQDNHGQDRYTTEVVVTGFNGQIQILDKLNEQPAQQQQQHQPPQHAAHHGNHHQPQNTRYPTKTNPPSSPPAEG
YDDYDDSIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=657289 MJO57_RS07325 WP_252020718.1 1719058..1719570(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
ATGAGCAGAGGCGTTAATAAAGTCATCCTGGTTGGGCATGTCGGGCAGGACCCCGTCGTGCGCTATACCCCCGGTGGCGA
AGCGGTGGCCAACATCAGTCTTGCTACCTCGGAGAAATGGAAGGACCGGAACGGACAGCCACAGGAAAGAACCGAGTGGC
ACCGCATCGTCACCTTCGGCAAGCTGGCAGACATTGCCCAGCAGCTGGTGCGCAAGGGCAGCAAGCTCTACATCGAAGGC
AAACTCCAGACCCGCAAGTGGCAGGACAATCACGGCCAGGACCGATACACCACGGAAGTCGTGGTCACCGGCTTCAACGG
ACAGATTCAGATCCTGGACAAGCTGAATGAGCAGCCTGCCCAGCAACAACAACAGCATCAGCCACCACAACACGCCGCTC
ACCACGGCAACCATCACCAGCCACAGAACACCCGCTACCCAACCAAGACGAACCCGCCGTCATCGCCACCCGCTGAGGGG
TATGACGACTACGATGACTCGATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.913

100

0.559
  ssb Glaesserella parasuis strain SC1401

42.857

100

0.459
  ssb Neisseria meningitidis MC58

40.782

100

0.429
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.429