Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU26_RS07900 Genome accession   NZ_CP108249
Coordinates   1850159..1850950 (+) Length   263 a.a.
NCBI ID   WP_030301390.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00069     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845159..1855950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU26_RS07885 (OHU26_07865) - 1845658..1846053 (+) 396 WP_405700611.1 winged helix-turn-helix transcriptional regulator -
  OHU26_RS07890 (OHU26_07870) - 1846156..1849044 (-) 2889 WP_405700612.1 vitamin B12-dependent ribonucleotide reductase -
  OHU26_RS07895 (OHU26_07875) nrdR 1849177..1849689 (-) 513 WP_134070617.1 transcriptional regulator NrdR -
  OHU26_RS07900 (OHU26_07880) dinR/lexA 1850159..1850950 (+) 792 WP_030301390.1 transcriptional repressor LexA Regulator
  OHU26_RS07905 (OHU26_07885) - 1851098..1853068 (-) 1971 WP_266636106.1 ATP-dependent DNA helicase -
  OHU26_RS07910 (OHU26_07890) - 1853121..1854851 (-) 1731 WP_405700613.1 IucA/IucC family protein -
  OHU26_RS07915 (OHU26_07895) - 1855114..1855827 (-) 714 WP_405700614.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28530.33 Da        Isoelectric Point: 7.4240

>NTDB_id=657289 OHU26_RS07900 WP_030301390.1 1850159..1850950(+) (dinR/lexA) [Streptomyces sp. NBC_00069]
MTTTADSATITAQNRSQSRLEPVHPMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=657289 OHU26_RS07900 WP_030301390.1 1850159..1850950(+) (dinR/lexA) [Streptomyces sp. NBC_00069]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATCCCATGAA
TGACGCAAGCCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGATCGCTGCCAGGTCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGACTCACCGACCGGCAGCGGAGGGTCATCGAAGTCATTCGCGATTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAA
GGGCTTCCTGCGCCGGGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGAGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGTCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CTGCGATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376