Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU26_RS05860 Genome accession   NZ_CP108249
Coordinates   1288509..1289138 (+) Length   209 a.a.
NCBI ID   WP_266634596.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00069     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283509..1294138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU26_RS05840 (OHU26_05820) - 1284479..1285282 (+) 804 WP_266634604.1 IclR family transcriptional regulator -
  OHU26_RS05845 (OHU26_05825) - 1285389..1286090 (-) 702 WP_405700329.1 ABC transporter ATP-binding protein -
  OHU26_RS05850 (OHU26_05830) - 1286087..1287175 (-) 1089 WP_362632035.1 ABC transporter permease -
  OHU26_RS05855 (OHU26_05835) - 1287310..1288509 (+) 1200 WP_266634598.1 sensor histidine kinase -
  OHU26_RS05860 (OHU26_05840) vraR 1288509..1289138 (+) 630 WP_266634596.1 response regulator transcription factor Regulator
  OHU26_RS05865 (OHU26_05845) - 1289801..1291288 (-) 1488 WP_266634594.1 PLP-dependent aminotransferase family protein -
  OHU26_RS05870 (OHU26_05850) - 1291533..1292162 (+) 630 WP_266634592.1 NTP transferase domain-containing protein -
  OHU26_RS05875 (OHU26_05855) aceB 1292435..1294063 (+) 1629 WP_405700331.1 malate synthase A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21872.21 Da        Isoelectric Point: 6.1066

>NTDB_id=657284 OHU26_RS05860 WP_266634596.1 1288509..1289138(+) (vraR) [Streptomyces sp. NBC_00069]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAASEPVDVVLMDLQFGTGMHGSAATAAITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKKLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATTRRLIRTA

Nucleotide


Download         Length: 630 bp        

>NTDB_id=657284 OHU26_RS05860 WP_266634596.1 1288509..1289138(+) (vraR) [Streptomyces sp. NBC_00069]
ATGACGATCCGCCTGCTGCTGGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGTGCGGTGCTGGACACCGAGCCGGA
CTTCGCGGTGGTCGCCGAGGCCGCCACCGCCGAGCGGGCCGTGGAACTGGCCGCCTCGGAGCCGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGTACGGGCATGCACGGCTCTGCGGCGACGGCGGCGATCACCGCCCGGCCCGGAGCCCCCCGGGTC
CTGGTCCTGACCACGTACGACACGGACGCGGACATCCTGGCAGCGGTGGAGGCGGGCGCGTCCGGCTACCTGCTGAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGCACCGCGGCGGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GCCTGATGGACCGGATGCGCACCCCCGCGGAGGCACTGACGAAGCGGGAGCTGGAGGTGCTCCAGCTGGTCGCGGACGGC
CTGTCGAACCAGCAGATCTCGAAGAAGCTCTTCCTGAGCCAGGCCACGGTCAAATCCCACCTGGTCCACATCTACGCGAA
GCTCGGCGTCGACTCCCGCACGTCGGCGGTGGCCGCGGCCACCACCCGCCGCCTGATCCGCACCGCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383