Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MJO53_RS05655 Genome accession   NZ_CP092415
Coordinates   1249478..1250836 (+) Length   452 a.a.
NCBI ID   WP_252080794.1    Uniprot ID   A0AA48KLH9
Organism   Flagellimonas marinaquae strain SCSIO W0262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1244478..1255836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO53_RS05630 (MJO53_05630) - 1245075..1245884 (-) 810 WP_224836204.1 glycogen/starch synthase -
  MJO53_RS05635 (MJO53_05635) panC 1245987..1246835 (+) 849 WP_252080791.1 pantoate--beta-alanine ligase -
  MJO53_RS05640 (MJO53_05640) panD 1246848..1247198 (+) 351 WP_224836202.1 aspartate 1-decarboxylase -
  MJO53_RS05645 (MJO53_05645) - 1247202..1248167 (+) 966 WP_252080792.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MJO53_RS05650 (MJO53_05650) - 1248192..1249334 (+) 1143 WP_252080793.1 alpha/beta hydrolase -
  MJO53_RS05655 (MJO53_05655) radA 1249478..1250836 (+) 1359 WP_252080794.1 DNA repair protein RadA Machinery gene
  MJO53_RS05660 (MJO53_05660) - 1250838..1251878 (-) 1041 WP_252080795.1 aldo/keto reductase -
  MJO53_RS05665 (MJO53_05665) - 1251953..1252717 (-) 765 WP_252080796.1 exodeoxyribonuclease III -
  MJO53_RS05670 (MJO53_05670) - 1252853..1253407 (+) 555 WP_252080797.1 cysteine hydrolase family protein -
  MJO53_RS05675 (MJO53_05675) - 1253445..1254551 (+) 1107 WP_252080798.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49609.16 Da        Isoelectric Point: 7.5984

>NTDB_id=657275 MJO53_RS05655 WP_252080794.1 1249478..1250836(+) (radA) [Flagellimonas marinaquae strain SCSIO W0262]
MAKTKTAFFCQNCGAQFPKWIGQCSSCKEWNTIVEEVVQKEDKKGWKTDRPANTSNKPLRVSEITQEKELRLDTKDQEFN
RVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKILYVSGEESQRQIKMRADRIQPKSENCYILTETKTQNIFQQIA
SIEPDLVVIDSIQTLHTDYIESAAGSISQIRECTAELIKFAKESHTPVILVGHITKDGTIAGPKILEHMVDTVLQFEGDR
NYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNDEDLSGTAIAATVEGMRPLLIEIQALVSTAVYGTPQ
RSATGFNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVMAAILSSNSDIAIEKGVCFAAEVGLAGEIR
PVQRVDQRILEAEKLGFSKIFVSKNNKIGLKQSGIQIQKVSKIEDVVAHLFG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=657275 MJO53_RS05655 WP_252080794.1 1249478..1250836(+) (radA) [Flagellimonas marinaquae strain SCSIO W0262]
ATGGCCAAGACCAAAACAGCATTTTTTTGTCAAAATTGTGGAGCTCAATTCCCAAAATGGATCGGGCAATGTTCCTCTTG
TAAGGAATGGAACACCATTGTAGAAGAAGTTGTCCAAAAAGAGGACAAAAAAGGGTGGAAAACAGATCGGCCCGCCAACA
CCTCCAATAAGCCGCTTCGTGTTTCCGAAATAACACAGGAAAAGGAACTCCGCTTGGACACCAAAGACCAAGAGTTCAAC
CGCGTGTTGGGCGGTGGATTGGTACCAGGGTCTTTAACCTTATTAGGGGGGGAACCCGGTATTGGAAAAAGTACCTTGTT
GCTTCAAATCGCGCTAAAACTGCCCTATAAAATACTTTATGTGTCGGGGGAGGAGAGTCAAAGACAAATTAAAATGCGAG
CAGACCGTATTCAACCTAAAAGCGAGAATTGCTACATCCTTACCGAGACCAAAACACAAAATATATTCCAGCAGATTGCC
TCTATTGAGCCCGATTTAGTGGTCATCGACTCTATTCAGACCCTGCACACGGATTATATCGAATCCGCAGCGGGGAGCAT
TTCCCAAATCCGGGAATGCACCGCGGAACTGATCAAATTTGCCAAGGAAAGTCATACTCCTGTTATTTTGGTAGGACACA
TCACCAAAGATGGAACTATTGCAGGCCCCAAGATTTTGGAGCATATGGTGGATACCGTTCTCCAGTTTGAAGGAGACCGC
AATTATGTATATCGCATTCTCCGTTCCCTTAAAAACCGCTTTGGTTCCACTGCCGAACTGGGCATTTACGAAATGCAAGG
AAGCGGCCTACGCGAAGTGAACAATCCATCGGAGGTGCTTATTTCCAAAAATGACGAAGACCTCAGCGGCACTGCCATCG
CAGCCACGGTGGAAGGTATGCGACCCTTGTTGATAGAAATTCAGGCCTTGGTTAGCACAGCGGTCTACGGAACACCACAA
CGTTCCGCCACAGGTTTTAATGCCAAACGTTTGAACATGCTCTTGGCCGTTTTGGAAAAACGCGCAGGTTTTAAGTTAGG
GGCAAAAGATGTTTTTTTAAACATCACCGGTGGAATATCCGTGGATGATCCTGCCATTGACCTGGCTGTTATGGCCGCCA
TCCTATCAAGCAATTCCGATATCGCCATAGAAAAAGGCGTTTGTTTTGCCGCAGAAGTCGGACTTGCGGGAGAAATTAGG
CCAGTGCAACGAGTAGATCAGCGCATTCTCGAAGCCGAAAAATTGGGCTTTTCCAAAATATTTGTCTCCAAAAACAATAA
GATAGGTTTAAAACAATCCGGCATACAGATTCAAAAAGTATCCAAGATCGAGGACGTCGTTGCTCATCTCTTTGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(326-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(66-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.899

100

0.491
  radA Streptococcus pneumoniae Rx1

48.899

100

0.491
  radA Streptococcus pneumoniae D39

48.899

100

0.491
  radA Streptococcus mitis SK321

48.899

100

0.491
  radA Streptococcus pneumoniae TIGR4

48.899

100

0.491
  radA Streptococcus mitis NCTC 12261

48.899

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

48.14

100

0.487