Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG816_RS26950 Genome accession   NZ_CP108244
Coordinates   5721860..5723077 (+) Length   405 a.a.
NCBI ID   WP_329314636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5716860..5728077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG816_RS26935 (OG816_26885) - 5717686..5719116 (+) 1431 WP_327278772.1 sugar porter family MFS transporter -
  OG816_RS26940 (OG816_26890) - 5719166..5720152 (-) 987 WP_327278773.1 LLM class flavin-dependent oxidoreductase -
  OG816_RS26945 (OG816_26895) - 5720216..5721712 (-) 1497 WP_327278774.1 cytosine permease -
  OG816_RS26950 (OG816_26900) pilA 5721860..5723077 (+) 1218 WP_329314636.1 signal recognition particle-docking protein FtsY Machinery gene
  OG816_RS26955 (OG816_26905) - 5723163..5723831 (-) 669 WP_327278776.1 bifunctional DNA primase/polymerase -
  OG816_RS26960 (OG816_26910) - 5724234..5725739 (+) 1506 WP_371644956.1 hypothetical protein -
  OG816_RS26965 (OG816_26915) - 5726122..5727465 (+) 1344 WP_328763833.1 ammonium transporter -
  OG816_RS26970 (OG816_26920) - 5727462..5727800 (+) 339 WP_053691083.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42471.62 Da        Isoelectric Point: 4.4045

>NTDB_id=657254 OG816_RS26950 WP_329314636.1 5721860..5723077(+) (pilA) [Streptomyces sp. NBC_00073]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPSAPSSTPTITAPPVEPQVGEDAVETAEEPRRTIEEVALPEAEAAAPE
APVVAEPEAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPVELRTLLKEELLTLVGTDFDRAVKTESAADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=657254 OG816_RS26950 WP_329314636.1 5721860..5723077(+) (pilA) [Streptomyces sp. NBC_00073]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGTAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTGCCCCGCCCGTCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCCCGCCGCACCATCGAGGAGGTCGCCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGTCGTCGCCGAGCCCGAGGCGCCGGCAGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTACG
GCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAACACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTCGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCGGTCGAGCTGCGCACCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCGGTCAAGACCGAGAGCGCCGCGGACACCCCGGGCGTCGTGATGGTCGTCGGTGTGA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTGGTCGCCGACGGCCGCTCCGTGGTGCTCGGCGCG
GCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGGGTCGGCGCGCGCACCGTACGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTCGACGAGATCCTGCTCGTCCTGGACGCCACCACCGGGCAGAACGGTCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGGACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCATCGGCCTCGGCGAGGGCCCCGACGACCTCGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(206-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.723

100

0.417