Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MH925_RS12040 Genome accession   NZ_CP092412
Coordinates   2481695..2482462 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus velezensis strain HNU24     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2476695..2487462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MH925_RS12020 - 2476897..2477709 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  MH925_RS12025 ccpN 2477735..2478373 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  MH925_RS12030 glyS 2478474..2480513 (-) 2040 WP_012118013.1 glycine--tRNA ligase subunit beta -
  MH925_RS12035 glyQ 2480506..2481393 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  MH925_RS12040 recO 2481695..2482462 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  MH925_RS12045 - 2482499..2482642 (-) 144 WP_007408286.1 YqzL family protein -
  MH925_RS12050 era 2482797..2483702 (-) 906 WP_007408285.1 GTPase Era -
  MH925_RS12055 - 2483683..2484093 (-) 411 WP_003152976.1 cytidine deaminase -
  MH925_RS12060 - 2484217..2484591 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  MH925_RS12065 ybeY 2484572..2485045 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  MH925_RS12070 - 2485046..2487178 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=657245 MH925_RS12040 WP_012118014.1 2481695..2482462(-) (recO) [Bacillus velezensis strain HNU24]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=657245 MH925_RS12040 WP_012118014.1 2481695..2482462(-) (recO) [Bacillus velezensis strain HNU24]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886