Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MH925_RS11775 Genome accession   NZ_CP092412
Coordinates   2434442..2435479 (-) Length   345 a.a.
NCBI ID   WP_012117984.1    Uniprot ID   -
Organism   Bacillus velezensis strain HNU24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2429442..2440479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MH925_RS11725 tasA 2429676..2430461 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  MH925_RS11730 sipW 2430526..2431110 (-) 585 WP_012117977.1 signal peptidase I SipW -
  MH925_RS11735 tapA 2431082..2431753 (-) 672 WP_012117978.1 amyloid fiber anchoring/assembly protein TapA -
  MH925_RS11740 - 2432012..2432341 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  MH925_RS11745 - 2432381..2432560 (-) 180 WP_003153093.1 YqzE family protein -
  MH925_RS11750 comGG 2432617..2432994 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  MH925_RS11755 comGF 2432995..2433495 (-) 501 WP_012117981.1 competence type IV pilus minor pilin ComGF -
  MH925_RS11760 comGE 2433404..2433718 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  MH925_RS11765 comGD 2433702..2434139 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  MH925_RS11770 comGC 2434129..2434395 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  MH925_RS11775 comGB 2434442..2435479 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  MH925_RS11780 comGA 2435466..2436536 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  MH925_RS11785 - 2436733..2437683 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  MH925_RS11790 - 2437829..2439130 (+) 1302 WP_012117986.1 hemolysin family protein -
  MH925_RS11795 - 2439168..2439998 (-) 831 WP_012117987.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39527.77 Da        Isoelectric Point: 9.4012

>NTDB_id=657243 MH925_RS11775 WP_012117984.1 2434442..2435479(-) (comGB) [Bacillus velezensis strain HNU24]
MKRINRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLRQGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTDQIKKMLRYPMFLISSVCVMFYILQSLIIPQFAGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=657243 MH925_RS11775 WP_012117984.1 2434442..2435479(-) (comGB) [Bacillus velezensis strain HNU24]
ATGAAGCGGATTAACCGAACCTGGCCCTTGAAGGATCAAGCAGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGCAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGGA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTGCTGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAAAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614