Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG816_RS16495 Genome accession   NZ_CP108244
Coordinates   3546503..3547480 (-) Length   325 a.a.
NCBI ID   WP_405756307.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00073     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3541503..3552480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG816_RS16475 (OG816_16455) pfkB 3542066..3543016 (-) 951 WP_327283859.1 1-phosphofructokinase -
  OG816_RS16480 (OG816_16460) - 3543013..3543771 (-) 759 WP_371643819.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG816_RS16485 (OG816_16465) - 3543915..3545411 (-) 1497 WP_327283861.1 MFS transporter -
  OG816_RS16490 (OG816_16470) - 3545476..3546432 (+) 957 WP_405756306.1 helix-turn-helix transcriptional regulator -
  OG816_RS16495 (OG816_16475) rpoS 3546503..3547480 (-) 978 WP_405756307.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG816_RS16500 (OG816_16480) - 3547944..3549485 (-) 1542 WP_327283864.1 MFS transporter -
  OG816_RS16505 (OG816_16485) - 3549579..3550283 (-) 705 WP_327283865.1 TetR/AcrR family transcriptional regulator -
  OG816_RS16510 (OG816_16490) - 3550528..3551805 (+) 1278 WP_328763022.1 M6 family metalloprotease domain-containing protein -
  OG816_RS16515 (OG816_16495) - 3551853..3552332 (+) 480 WP_327283867.1 RidA family protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36563.27 Da        Isoelectric Point: 4.8419

>NTDB_id=657225 OG816_RS16495 WP_405756307.1 3546503..3547480(-) (rpoS) [Streptomyces sp. NBC_00073]
MATRAVARRQPRGSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGETECEGETPAREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPDHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGETQFGDLLEDT
SAVSPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=657225 OG816_RS16495 WP_405756307.1 3546503..3547480(-) (rpoS) [Streptomyces sp. NBC_00073]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGCCCAGGGGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCACAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGTGAGACGGAGTGCGAGGGCGAGACGCCGGCGCGCGAGGAGCTGGAA
GCCCTGGCCGCGGAAGGGGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAATGCCGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAACTCGGCCGCATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGACCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCCCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGAGACCCAGTTCGGCGACCTCCTCGAAGACACC
TCCGCGGTCTCCCCGGAGCAGTCCGTCCTGTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGAAGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGGCTCACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTTCTGGAACTGAAGCGCATGGCCCGCGACACCGGC
TTCGACGCAGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39

92.308

0.36