Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MJP36_RS06275 Genome accession   NZ_CP092411
Coordinates   1381760..1383127 (+) Length   455 a.a.
NCBI ID   WP_060752310.1    Uniprot ID   A0A1H5ASB5
Organism   Pseudomonas palleroniana strain Q1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1376760..1388127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJP36_RS06250 (MJP36_06250) - 1376911..1377621 (-) 711 WP_244385048.1 helix-turn-helix transcriptional regulator -
  MJP36_RS06255 (MJP36_06255) - 1378067..1378843 (+) 777 WP_060752314.1 ferredoxin--NADP reductase -
  MJP36_RS06260 (MJP36_06260) mscL 1378884..1379300 (-) 417 WP_060752313.1 large-conductance mechanosensitive channel protein MscL -
  MJP36_RS06265 (MJP36_06265) katB 1379588..1381129 (+) 1542 WP_244385049.1 catalase KatB -
  MJP36_RS06270 (MJP36_06270) - 1381185..1381724 (+) 540 WP_060752311.1 ankyrin repeat domain-containing protein -
  MJP36_RS06275 (MJP36_06275) radA 1381760..1383127 (+) 1368 WP_060752310.1 DNA repair protein RadA Machinery gene
  MJP36_RS06280 (MJP36_06280) - 1383144..1383881 (+) 738 WP_244385050.1 hypothetical protein -
  MJP36_RS06285 (MJP36_06285) - 1383886..1384254 (-) 369 WP_205344966.1 PilZ domain-containing protein -
  MJP36_RS06290 (MJP36_06290) - 1384428..1386494 (+) 2067 WP_198762435.1 carbon starvation CstA family protein -
  MJP36_RS06295 (MJP36_06295) - 1386510..1386707 (+) 198 WP_003194308.1 YbdD/YjiX family protein -
  MJP36_RS06300 (MJP36_06300) yjiA 1386860..1387819 (+) 960 WP_244385051.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48717.19 Da        Isoelectric Point: 6.8987

>NTDB_id=657186 MJP36_RS06275 WP_060752310.1 1381760..1383127(+) (radA) [Pseudomonas palleroniana strain Q1]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=657186 MJP36_RS06275 WP_060752310.1 1381760..1383127(+) (radA) [Pseudomonas palleroniana strain Q1]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCAGCGAGTG
CGGCGCGTGGAATACCCTGACTGAAACCATGATCGAAAGCGGCGGTGCGGCGGCGCCTGCCGGGCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACGCTGGCCGAGGTCAGTGTCGAGGAGATCCCGCGTTTCTCCACGGCGTCCGGTGAGCTG
GACCGCGTGCTCGGTGGCGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGCGACCCGGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAGTCCCAACAGCAAGTGG
CCATGCGCGCTAGACGGCTCGGTTTGCCCCAGGACCAACTGCGGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAACAACTGCAATCGGCGCC
GGGCGGTGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAAGGGGCGCTGGCGGGGCCACGAGTACTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGTCGTCTGCGTTTGTTACGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAACTCGGTGTGTTCGC
GATGACCGACAGGGGGTTGAAAGAAGTCTCCAACCCGTCGGCAATTTTTCTGACGCGTGCCCAGGAAGAAGTCCCGGGAA
GCGTGGTGATGGCAACGTGGGAGGGCACCCGCCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGACGGGTCACCCTCGGCCTGGATCAGAATCGCCTGGCGATGCTCCTGGCGGTATTGCACCGTCACGGCGGTAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTACTGGAAACCGCCTCCGACCTTGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGCCCCATGACCTGCTGGTGTTTGGCGAAGTCGGCCTGTCTGGC
GAAGTACGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCCGCCAAGCATGGTTTCAAGCGCGCTATCGTGCCCAA
GGGCAACGCGCCGAAAGAGTCGCCGGCAGGCTTGCAAATTATTGCTGTCACGCGCCTGGAGCAGGCGTTGGACGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5ASB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464