Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG787_RS46775 Genome accession   NZ_CP108243
Coordinates   10696789..10697805 (-) Length   338 a.a.
NCBI ID   WP_405539601.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10691789..10702805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS46760 (OG787_46640) - 10691934..10694324 (-) 2391 WP_405540782.1 SpoIIE family protein phosphatase -
  OG787_RS46765 - 10694647..10694814 (+) 168 WP_405539599.1 transposase -
  OG787_RS46770 (OG787_46645) - 10695190..10696431 (-) 1242 WP_405539600.1 hypothetical protein -
  OG787_RS46775 (OG787_46650) cytR 10696789..10697805 (-) 1017 WP_405539601.1 LacI family DNA-binding transcriptional regulator Regulator
  OG787_RS46780 (OG787_46655) - 10697811..10699280 (-) 1470 WP_405539602.1 GH39 family glycosyl hydrolase -
  OG787_RS46785 (OG787_46660) - 10699277..10700065 (-) 789 WP_405539603.1 alpha/beta fold hydrolase -
  OG787_RS46790 (OG787_46665) - 10700062..10701645 (-) 1584 WP_405540783.1 glycoside hydrolase family 43 protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36123.41 Da        Isoelectric Point: 11.2008

>NTDB_id=657180 OG787_RS46775 WP_405539601.1 10696789..10697805(-) (cytR) [Streptomyces sp. NBC_00075]
MPRTTSLPTLAQIAQIAGVSVPTASRVVNGRENVAPETRLRVEEAVRKAGYVRRPQSAPSGPVPLVDVVLPGFGSGWSGE
VLRGAEAAGAELGLGIVVSSWLRDRAGRLDRLAAHGTSAVLFAGTRLNPTQHLWLSRRRIPYAVLEPGVEPPPGVPAVGA
DNRSGGRAATEHLLALGHRRIAVLGGHRRMPSSNARINGYRQALTSAWIKPRPEYVRHAGFDTDRAEQLAGELLDLPEPP
TALFLCSDEMAFGVLRAAGRRGLRVPDDLSVVGFDDIPDARRLVPGLTTVHQPIAEMAATALRTLVRLLHGLHVDDTRTD
LPTRLVVRGSTAPPPPVP

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=657180 OG787_RS46775 WP_405539601.1 10696789..10697805(-) (cytR) [Streptomyces sp. NBC_00075]
ATGCCACGTACGACGTCGCTGCCGACGCTCGCCCAGATCGCCCAGATCGCGGGTGTCTCGGTCCCCACCGCCTCCCGGGT
GGTCAACGGCCGGGAGAACGTTGCGCCGGAGACCCGGCTACGGGTGGAGGAAGCGGTGCGCAAGGCAGGCTATGTACGAC
GGCCGCAGTCGGCCCCGTCCGGTCCCGTCCCCCTGGTGGACGTGGTACTGCCCGGCTTCGGAAGCGGCTGGTCCGGCGAG
GTGCTGCGCGGAGCGGAAGCGGCCGGCGCCGAGTTGGGCCTCGGCATTGTGGTCTCCTCATGGCTGCGGGACCGCGCGGG
GCGCCTGGACCGACTGGCGGCCCACGGGACGTCCGCAGTGCTGTTCGCCGGTACAAGGCTCAACCCCACCCAGCACCTCT
GGCTCTCCCGCCGTCGAATCCCGTACGCCGTCCTGGAGCCAGGCGTGGAGCCGCCGCCCGGTGTGCCCGCCGTCGGAGCC
GACAATCGCTCCGGCGGCCGGGCCGCCACCGAACATCTGCTGGCCCTGGGCCACCGGCGGATCGCGGTGCTGGGCGGTCA
CCGGCGGATGCCGAGCAGCAACGCCCGTATCAACGGCTACCGTCAGGCACTCACGTCCGCGTGGATCAAGCCCAGGCCGG
AATACGTACGTCATGCCGGCTTCGATACCGACCGGGCCGAGCAGCTTGCGGGAGAACTGCTGGACCTTCCGGAGCCGCCC
ACTGCCCTCTTCCTCTGTTCGGACGAGATGGCCTTCGGAGTCCTGCGGGCGGCCGGTCGGCGCGGGCTGCGCGTGCCGGA
CGACCTCAGCGTGGTCGGCTTCGACGACATCCCCGACGCTCGCCGCCTGGTACCGGGTCTGACAACCGTGCACCAGCCGA
TCGCCGAGATGGCAGCCACGGCCCTGCGCACCCTGGTGCGCCTGCTGCACGGGCTGCACGTCGACGACACCCGTACGGAC
CTTCCCACCCGGCTCGTCGTGCGCGGCAGCACCGCCCCTCCCCCGCCCGTGCCTTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-331)

Bacterial regulatory proteins, lacI family (LacI)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.443

100

0.37
  cytR Vibrio cholerae C6706

35.988

100

0.361