Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG787_RS34285 Genome accession   NZ_CP108243
Coordinates   7828808..7830541 (-) Length   577 a.a.
NCBI ID   WP_369034772.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7823808..7835541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS34270 (OG787_34165) - 7824467..7825159 (-) 693 WP_405537803.1 hypothetical protein -
  OG787_RS34275 (OG787_34170) - 7825298..7826662 (+) 1365 WP_369034770.1 RNA polymerase sigma factor -
  OG787_RS34280 (OG787_34175) rcrQ 7826874..7828808 (-) 1935 WP_369034771.1 ABC transporter ATP-binding protein Regulator
  OG787_RS34285 (OG787_34180) rcrP 7828808..7830541 (-) 1734 WP_369034772.1 ABC transporter ATP-binding protein Regulator
  OG787_RS34290 (OG787_34185) - 7830670..7832130 (-) 1461 WP_369034773.1 FGGY family carbohydrate kinase -
  OG787_RS34295 (OG787_34190) - 7832269..7832574 (-) 306 WP_369034774.1 YtxH domain-containing protein -
  OG787_RS34315 (OG787_34210) - 7833318..7833686 (-) 369 WP_369034775.1 hypothetical protein -
  OG787_RS34320 (OG787_34215) - 7833673..7834086 (+) 414 WP_369034776.1 RlpA-like double-psi beta-barrel domain-containing protein -
  OG787_RS34325 (OG787_34220) - 7834165..7835043 (-) 879 WP_369034777.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62810.24 Da        Isoelectric Point: 6.7566

>NTDB_id=657156 OG787_RS34285 WP_369034772.1 7828808..7830541(-) (rcrP) [Streptomyces sp. NBC_00075]
MLIRLLRTYLQPYRKPIGLLVLLQLLQTCATLYLPTLNADIIDDGVVKGDTDRILALGSLMIGISLVQVVCNIGAVYYGA
RTASALGRDVRTAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMASAPIMCVGGIVLALGLDVPLSGV
LIAVVPVLGICVTLIVRRLRPMFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFRKANHELTEVSLGTGRLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTSSSVVP
PVDPVVELRRHGHLEIRGAGFRYPGAEEPVLRAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPRLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWRALEVAQGKGFVERLEGRLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657156 OG787_RS34285 WP_369034772.1 7828808..7830541(-) (rcrP) [Streptomyces sp. NBC_00075]
GTGCTCATACGACTTCTCCGCACTTACCTACAGCCGTACAGGAAACCCATCGGCCTGCTCGTGCTGCTCCAGCTCCTTCA
GACCTGCGCCACCCTCTATCTGCCCACGCTCAACGCGGACATCATCGACGACGGTGTGGTCAAGGGCGACACGGACCGCA
TCCTGGCCCTCGGCTCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCCTCGGCGCTCGGCCGGGACGTACGCACGGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
ACAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTCGTGCTGATGACGTTCA
CGCTGATGGCGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCGCTGGGCCTGGATGTGCCGCTGTCGGGCGTG
CTGATCGCCGTCGTACCGGTGCTGGGCATCTGTGTGACGCTGATCGTGCGGCGGCTGCGGCCGATGTTCCGGTCGATGCA
GGTGCGGCTCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTACGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACCACGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTCAACATCTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCATCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTTCTCGGTACGTCGTCCAGTGTCGTACCG
CCGGTCGACCCGGTGGTGGAGCTGCGGCGGCACGGGCATCTGGAGATCCGGGGCGCCGGGTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCCGTCGACCTGGTGGCGCGGCCCGGTGAGGTGACCGCGGTGATCGGGTCCACGGGGAGCGGGA
AGTCGACGCTGCTGGGGCTGGTCCCCCGGCTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCGTGGAGCCGAGACTGCTGGCGCGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGGACCGTGGCGAC
CAATCTGCGGTACGGAAATCCGGACGCCACGGACGAGGAACTGTGGCGCGCGCTGGAGGTGGCGCAGGGCAAGGGGTTCG
TCGAGCGGCTGGAGGGCCGGCTCGACGCGCCGATCGCGCAGGGCGGTACGAACGTGTCGGGCGGCCAGCGACAACGGCTC
GCCATCGCCCGGACCCTGGTCCAGCGGCCCGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCCCTGCGGACGGCGCTCGCGCGCGAGACCGCCGAGGCGACCGTCGTGATCGTCGCGCAGCGGGTGTCCACGATCA
GGGAGGCGGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGCCATCACGAGCTGATGGCGGGCAAC
GAGACCTACCGCGAGATCGTCCTGTCCCAGCTCACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.898

100

0.392