Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MGJ28_RS23195 Genome accession   NZ_CP092387
Coordinates   4418384..4420111 (-) Length   575 a.a.
NCBI ID   WP_016765540.1    Uniprot ID   -
Organism   Priestia megaterium strain BP01R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4413384..4425111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGJ28_RS23175 (MGJ28_23180) - 4413718..4413870 (+) 153 WP_016765538.1 YycC family protein -
  MGJ28_RS23180 (MGJ28_23185) - 4414183..4415514 (+) 1332 WP_241096573.1 peptide MFS transporter -
  MGJ28_RS23185 (MGJ28_23190) spo0A 4415905..4416693 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  MGJ28_RS23190 (MGJ28_23195) spoIVB 4416921..4418201 (-) 1281 WP_016765539.1 SpoIVB peptidase -
  MGJ28_RS23195 (MGJ28_23200) recN 4418384..4420111 (-) 1728 WP_016765540.1 DNA repair protein RecN Machinery gene
  MGJ28_RS23200 (MGJ28_23205) ahrC 4420128..4420577 (-) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  MGJ28_RS23205 (MGJ28_23210) - 4420739..4421566 (-) 828 WP_241096574.1 TlyA family RNA methyltransferase -
  MGJ28_RS23210 (MGJ28_23215) dxs 4421563..4423464 (-) 1902 WP_014458248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MGJ28_RS23215 (MGJ28_23220) - 4423785..4424681 (-) 897 WP_241096575.1 polyprenyl synthetase family protein -
  MGJ28_RS23220 (MGJ28_23225) - 4424681..4424914 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64693.23 Da        Isoelectric Point: 4.8014

>NTDB_id=657155 MGJ28_RS23195 WP_016765540.1 4418384..4420111(-) (recN) [Priestia megaterium strain BP01R2]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEELNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=657155 MGJ28_RS23195 WP_016765540.1 4418384..4420111(-) (recN) [Priestia megaterium strain BP01R2]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTACGCCACGGAACAGACAGAGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGCATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACGTTAATTGATATACATGGACAGCATG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTCGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACACCAAGGTTTAGATTGGGTCGGTGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCACGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTTTAGAATATGCAGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAAGAGTTAAACAGTGTAGCACAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACTGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGCAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACCAATCCTGGTGAACCTTTAAAGCCTCTGGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAAAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGACGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCTATTTCTGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
TCAGGTAGCAGCGATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGGATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

65.104

100

0.652