Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG787_RS34280 Genome accession   NZ_CP108243
Coordinates   7826874..7828808 (-) Length   644 a.a.
NCBI ID   WP_369034771.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7821874..7833808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS34265 (OG787_34160) - 7823481..7824470 (-) 990 WP_369034768.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG787_RS34270 (OG787_34165) - 7824467..7825159 (-) 693 WP_405537803.1 hypothetical protein -
  OG787_RS34275 (OG787_34170) - 7825298..7826662 (+) 1365 WP_369034770.1 RNA polymerase sigma factor -
  OG787_RS34280 (OG787_34175) rcrQ 7826874..7828808 (-) 1935 WP_369034771.1 ABC transporter ATP-binding protein Regulator
  OG787_RS34285 (OG787_34180) rcrP 7828808..7830541 (-) 1734 WP_369034772.1 ABC transporter ATP-binding protein Regulator
  OG787_RS34290 (OG787_34185) - 7830670..7832130 (-) 1461 WP_369034773.1 FGGY family carbohydrate kinase -
  OG787_RS34295 (OG787_34190) - 7832269..7832574 (-) 306 WP_369034774.1 YtxH domain-containing protein -
  OG787_RS34315 (OG787_34210) - 7833318..7833686 (-) 369 WP_369034775.1 hypothetical protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69699.98 Da        Isoelectric Point: 5.2143

>NTDB_id=657155 OG787_RS34280 WP_369034771.1 7826874..7828808(-) (rcrQ) [Streptomyces sp. NBC_00075]
MAGPMGRMMAGTGPDHHSLDFKESGKRLLAQFRPERATMYVMLLAVFVSVGLSVVGPKILGRATDLVFAGIIGRQFDSGS
TKAEVLAGMRERGEGGAADMLSGTDFTPGKGIDFGAVGEVLGLALVVFLFSGLLMLVATRLVNRAVNRTVSRMRADLQEK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSLGQLINSLLTIVGVLAMMFWVSWLLALVALVTVPLSFYVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDAEEQEADPVPGVRPEELRGLVALE
HVSFRYDPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSREELRAGIGMVLQDT
WLFGGTIAENIAYGAAREREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLGADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=657155 OG787_RS34280 WP_369034771.1 7826874..7828808(-) (rcrQ) [Streptomyces sp. NBC_00075]
ATGGCCGGGCCCATGGGGCGCATGATGGCGGGCACCGGACCCGACCACCACTCACTGGACTTCAAGGAGTCGGGCAAACG
ACTCCTCGCCCAGTTCAGGCCCGAACGGGCCACGATGTACGTGATGCTGCTCGCGGTGTTCGTGAGCGTGGGCCTGTCGG
TGGTGGGCCCGAAGATCCTGGGGCGGGCGACCGACCTGGTCTTCGCCGGCATCATCGGACGGCAGTTCGACAGCGGGAGC
ACGAAGGCCGAGGTTCTCGCCGGGATGCGGGAACGCGGCGAGGGCGGCGCGGCCGACATGCTCTCCGGTACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGTGCGGTGGGTGAGGTGCTGGGGCTGGCCCTGGTGGTGTTCCTCTTCTCCGGGCTGC
TGATGCTGGTGGCCACCCGGCTGGTGAACCGGGCGGTCAACCGGACCGTGTCCCGGATGCGCGCGGACCTCCAGGAGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCGCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGCTGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGCGTACTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCACTGGTCGCGCTGGTGACCGTACCGCTGTCGTTCTACGTCGCCACGCGCATCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGACGCCAGGACGAGTCGGCGCAGCAGTTCGCGGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGTGGGGTCATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTGGGTGGGTTGCGGGTCGCTTCGGGCGCGTTGTCGATCGGTGATGTGCAGGCTTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCCTCGGCCGAGCGGGTCTTCGAGG
TGCTGGACGCGGAGGAGCAGGAGGCCGATCCGGTGCCGGGGGTGCGGCCGGAGGAGCTGCGGGGGCTGGTCGCGCTGGAG
CATGTGTCGTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGGCGGTGGAGCCGGGGCACACGGTGGC
GATCGTCGGGCCCACGGGGGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGCCGGA
TCACCCTCGACGGGGTGGACATCGCGGCCATGTCCCGGGAGGAACTCCGGGCCGGGATAGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCGCGCGGGAGCGTGAGGTGACGCGCGGGGAGATCGA
GGAGGCGGCGCGGGCGGCGCACGCGGATCGGTTCATCCGGACGTTGCCGGACGGGTACGACACGGTGATCGACGACGAGG
GGACGGGGGTCAGCGCGGGTGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTGTCGGATCCGGTGATTCTGGTGCTG
GACGAGGCGACGAGTTCGGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGAC
GTCGTTCGTGATCGCGCATCGGCTGTCGACGATTCGGGATGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGG
AGCAGGGGGCGCACGGGGAGTTGTTGGGGGCGGACGGGGCTTATGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCTGAGGTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.224

96.429

0.398