Detailed information NTG0657107

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: MID13_RS14370
• Genome accession: NZ_CP092384
• Coordinates: 3185334..3186338 (+)
• Length: 334 a.a.
• NCBI ID: WP_017103629.1
• Uniprot ID: A0A0T7DQF5
• Organism: Vibrio gigantis strain ACE001
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3180334..3191338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID13_RS14355 (MID13_14355)	-	3180721..3182010 (-)	1290	WP_239716795.1	malic enzyme-like NAD(P)-binding protein	-
MID13_RS14360 (MID13_14360)	rpmE	3182344..3182562 (-)	219	WP_086715817.1	50S ribosomal protein L31	-
MID13_RS14365 (MID13_14365)	priA	3182892..3185093 (+)	2202	WP_239716797.1	primosomal protein N'	-
MID13_RS14370 (MID13_14370)	cytR	3185334..3186338 (+)	1005	WP_017103629.1	DNA-binding transcriptional regulator CytR	Regulator
MID13_RS14375 (MID13_14375)	-	3186461..3187000 (+)	540	WP_076656769.1	SPOR domain-containing protein	-
MID13_RS14380 (MID13_14380)	hslV	3187225..3187773 (+)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
MID13_RS14385 (MID13_14385)	hslU	3187832..3189172 (+)	1341	WP_086715823.1	HslU--HslV peptidase ATPase subunit	-
MID13_RS14390 (MID13_14390)	-	3189328..3190245 (+)	918	WP_086715825.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
MID13_RS14395 (MID13_14395)	rraA	3190319..3190837 (+)	519	WP_017071322.1	ribonuclease E activity regulator RraA	-
MID13_RS14400 (MID13_14400)	zapB	3190933..3191175 (-)	243	WP_008219652.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36541.09 Da
• Isoelectric Point: 6.4911

>NTDB_id=657107 MID13_RS14370 WP_017103629.1 3185334..3186338(+) (cytR) [Vibrio gigantis strain ACE001]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=657107 MID13_RS14370 WP_017103629.1 3185334..3186338(+) (cytR) [Vibrio gigantis strain ACE001]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGCAAACGAGTCGAAACAGCCGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCATT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGCATGCTGCTGCTTGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AGCAAAAGAATTTACCGCCGATGGTAATGGCGTGTGAGTTTGCCCCTGAGCTTGAGCTACCTACGGTACACATCGACAAC
CTGACCTCTGCATTCGAAGCGGTTAACTACCTCGCTCAGTTAGGTCATAAACGTATCGCTCAAATTTCAGGACCAGTATC
AGCAACGTTGTGTAAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGTCGTGCCGGAGTATCGATGAATCCAGCTTACA
GCACAGTCGGCGACTTCACCTTTGAAGCGGGCGCTCAAGCGGTTCGCCAATTACTGGCACTTCCTGAACAGCCAACCGCT
ATTTTCTGTCACAACGATGCGATGGCCATTGGTGCAATTCAAGAAGCGAAGAAGCTCGGCTTACGCGTTCCTCAAGACCT
GTCGATTGTCGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACCATATCTCAACCTCGTTACG
AAATTGGACGCCAAGCGATGTTGATGATGCTAGATCTACTGAAAGGCAATGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTGGTCGTTCGAGGCAGTACAGCGCCACCTCGAATGTGA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A0T7DQF5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.759	99.401	0.892
cytR	Vibrio parahaemolyticus RIMD 2210633	87.688	99.701	0.874