Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MID13_RS12900 Genome accession   NZ_CP092384
Coordinates   2909361..2909879 (-) Length   172 a.a.
NCBI ID   WP_086711976.1    Uniprot ID   A0A5M9N722
Organism   Vibrio gigantis strain ACE001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904361..2914879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS12875 (MID13_12875) rimM 2904447..2905001 (-) 555 WP_048615624.1 ribosome maturation factor RimM -
  MID13_RS12880 (MID13_12880) rpsP 2905026..2905274 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  MID13_RS12885 (MID13_12885) ffh 2905487..2906881 (-) 1395 WP_010435884.1 signal recognition particle protein -
  MID13_RS12890 (MID13_12890) - 2907082..2907876 (+) 795 WP_239716638.1 cytochrome C assembly family protein -
  MID13_RS12895 (MID13_12895) - 2908004..2909275 (+) 1272 WP_086711975.1 HlyC/CorC family transporter -
  MID13_RS12900 (MID13_12900) luxS 2909361..2909879 (-) 519 WP_086711976.1 S-ribosylhomocysteine lyase Regulator
  MID13_RS12905 (MID13_12905) - 2909904..2910554 (-) 651 WP_239716640.1 hypothetical protein -
  MID13_RS12910 (MID13_12910) gshA 2910565..2912133 (-) 1569 WP_086711978.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18921.64 Da        Isoelectric Point: 4.4820

>NTDB_id=657094 MID13_RS12900 WP_086711976.1 2909361..2909879(-) (luxS) [Vibrio gigantis strain ACE001]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=657094 MID13_RS12900 WP_086711976.1 2909361..2909879(-) (luxS) [Vibrio gigantis strain ACE001]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACAGTCTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ATACTTTAGAGCATCTATATGCTGGCTTTATGCGTGCTCAACTGAACGGTTCTGATGTAGAAATCATCGATATTTCACCT
ATGGGCTGCCGTACTGGTTTCTACATGAGCCTGATTGGTACACCGACAGAGCAACAAGTGGCGGATGCTTGGTTGGCGGC
GATGCAAGATGTACTGAAAGTTGAGAATCAGAATAAGATCCCTGAGTTGAATGAATACCAATGTGGCACTGCTGCAATGC
ACTCTTTGGATGAAGCGAAAGACATCGCCAACGCGATCATCGCAGCTGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCTGAGTCGATGCTTCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9N722

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89