Detailed information NTG0657088

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: MID13_RS12630
• Genome accession: NZ_CP092384
• Coordinates: 2839348..2842737 (+)
• Length: 1129 a.a.
• NCBI ID: WP_239716586.1
• Uniprot ID: -
• Organism: Vibrio gigantis strain ACE001
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2834348..2847737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID13_RS12610 (MID13_12610)	erpA	2834647..2834988 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
MID13_RS12615 (MID13_12615)	hemL	2835285..2836580 (+)	1296	WP_086711915.1	glutamate-1-semialdehyde 2,1-aminomutase	-
MID13_RS12620 (MID13_12620)	-	2836924..2838009 (+)	1086	WP_215404195.1	AI-2E family transporter	-
MID13_RS12625 (MID13_12625)	rsmC	2838109..2839131 (+)	1023	WP_239716584.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
MID13_RS12630 (MID13_12630)	chiS	2839348..2842737 (+)	3390	WP_239716586.1	response regulator	Regulator
MID13_RS12635 (MID13_12635)	-	2843437..2845119 (+)	1683	WP_060982640.1	ABC transporter substrate-binding protein	-
MID13_RS12640 (MID13_12640)	-	2845289..2846275 (+)	987	WP_017633262.1	ABC transporter permease	-
MID13_RS12645 (MID13_12645)	-	2846278..2847303 (+)	1026	WP_060982641.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127204.80 Da
• Isoelectric Point: 5.3636

>NTDB_id=657088 MID13_RS12630 WP_239716586.1 2839348..2842737(+) (chiS) [Vibrio gigantis strain ACE001]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGITFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFNNTQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIKKQNEDLQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPLPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDNYNESGHYSHFQAPDLIDNNQQENSAISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGINSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=657088 MID13_RS12630 WP_239716586.1 2839348..2842737(+) (chiS) [Vibrio gigantis strain ACE001]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGACCTTCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTACAGGCACAAGAATCTCAAGTTATGGGCTTTGTTCGTTCT
GAACTAGCCAATGCCAGTGGTGGCCGATTCTATGGATTAATCAATGCCTTCCAGCGATTGGGTTTAGACATTGACGAGGC
ACGCAGTAATGCGCAGCAGCGCTATATTCAAGGCTCTGGCGATCAAATCAAAACGTCGATTCTTCCTGAGTCCAGTAGCT
TTATTGGCAGCGAGCGTTATCGTCTACTTCACAAGCGCTACCATAATGCTTACCTAGAGCTGCTTAAACGCTCTGATTTT
GACGATATTCTATTGGTTGATATCAACGGTAACGTTGCTTATTCCGTCTTTAAAAATGACGATTACGGCACCAATTTGCT
GACAGGAAAATACAAAGACTCTAATTTAGGGATTACCTTTCAACGACTAGCAAAAGACGTCACCGACCGACGTAAATCTA
ACGAAGATTACACACCGGTTATCGTTTCTGACTTTAAAGACGAGAACGGTAAACAGACCGCATGGTTAGGCGCACCTATC
GTTCAACAGGGCTACCTGCACAGTTACGCGATGTTTAGACTCCCAATCAATGGCATTACTAAACTGATTGCGGACCTCAA
CAAGAGTTCGAATATTCAAACACTGCTTGTAGGTGACGATCACTTACCGCGAAGCCTTGCACATTCACAAGAATCGATTA
ATTTGAGCTTGGATGTTGTTGATAAAGCATTGGCAGGCGAAACAGCCGTTGGCACGTTCAATAACACGCAAGATCAAGCG
ATCATCGCGGCCTATACACCAATTGAACTCAAATATGCGACCTGGGCTCTGGTCGTAGAACTGCCTGAGAAAGAAGCGTT
TGCCCGCATTCATCAGTTAGAGAAGATCTTCGTGATCGTAATGCTAACGGCGATCATTCTGGTTGTTGTTGCATCGCACT
ATCTGTCTAACTTCATCACCTCACCGCTACTCAAGCTCACGTGGGCAGCCGAGAAAGTTTCTGCGGGCGATCTTGATGAG
ACGATGATCAATACAGAACGTAAAGATGAAATCGGTCGTTTGGCGGTCAGCTTTGAACGAATGCAACGCTCCATTCGTGA
AAAGATGCAGCTTATCAAAAGCCAAAATGATGAGCTTGAAGACAACCTCAAGACCATTAAAAAGCAAAACGAAGATTTGC
AGTTGGCTAACAAACTCAAAGATGAATTCTTAGCAACCACTTCTCACGAATTGAGAACACCATTGCATGGCATGGTTGGT
ATAGCTGAAGCGTTGATATCAGGAGCGAATGGTCCTCTTCCTGCTAATCAGAAGTATCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCGACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTGGACATTAAGAAGT
CAGCCGTTGATTTGTCTGCAGCCACCAGCTTGGTCCTAGAGTTGTCTCATCACCTGCTGGGCAATAAGCCAATCCGTATT
ATTAACCAAGTGCCAAGTGATTTAGGGCTCGTGTCATCGGATCCTCAACGACTTGAGCAGGTGATGTATAACTTGGTTGG
CAATGCCATCAAGTACACCTCGGAAGGTAAAATTGTTATCTCTGCTAGCGTTATCGACGACAACATTCGTGTCCAAGTGG
TTGACACAGGCCAAGGCATACCGGCCGAGTACCTTGAACATATCTTTGAACCATTGATTCAAGCAGGCCAAGATGCCAGT
AACTATCGCCAAGGTGCAGGCCTTGGTTTATCGATCAGTCGCCAATTAATTGAATTAATGGGTGGTTCGCTGTACGTAAG
TAGCCAGCCAATGCTTGGCACTACGTTTAGCTTTACCCTGCCCCTAGCTACTCAAGATGAGTTAGACAATTACAACGAAT
CAGGTCACTACTCACATTTCCAAGCGCCTGACTTGATAGATAACAACCAACAAGAAAACAGCGCTATCAGTGAGAACCCT
GACGGTCCGTTACTGGTTATCGCCGATGATGAGCCCGTTAACCTGCGAGTACTTGACAGCTTCTTGAAGTTAGAAGGTTA
TCGAGTACGTACTGCGTGTGACGGCCCTGAAACCATCGAGTTGATTGAAAAAGAGAAACCGGAACTACTGCTGCTCGATA
TTATGATGCCGGGCATGAGCGGTTACCAAGTGTGTGAGGCACTGCGTAAGCAATATGACCATGCTCAATTACCGATCATA
ATGCTAACGGCACTCAACCAAGCAGAGGATCGTGTGCGCGGCTTCGAAGCTGGTGCCAATGACTACTTATCCAAACCGTT
CAACAAACAAGAACTGGCGGCCCGAATTACAGCGCATCTATCAGCAAGTAAAGCAGAGCAAAGACGCCTTGAAAACGACC
AATTGCAACTTGAGCTCAAACATCGAGCCATGGTTGAAGCTAATCTGTTGGAAACTCAAGGACGATTGCTAGAACAGTTA
GAATCGGCACCAGAGGCCATTATCTGTATTCGTGATGACCAACGAATTCGCTTTGCTAACGAAGCGGCGGCGAAACTCTT
TAGGCGCGGACAAGAGCAACTAAAACGCTCAATGGCCGACGAGATCATTGCACCTAAATACCTCAAGGTAGAACAGGCGC
ATTATTGTGGTGATATTGATATCTATATAGACGACACACGTCAGCGCATACCGAGTGATATTCTTAAGCTGCCTGAAGGC
TCTGGGCTTGACACCATGTACATCTTCAATGTTGGCGGTGGCATAAACTCAAACCGCATCAATAACCTTGAAACTGCAGT
TGAGGCGCTCTCAAGCTATGCATTTGAAGGCGACAAGGATAAGTTACAACAGCTTAAGGAACTTGGTGGTGAATTTACTC
GCCTTGCTGACAAAGCAACCGGTGAAGGTAAAAACAAACAAGAGTTGATGCGTGAGGTGCTGGTAGACGCGATGACTAAT
GCCATCATCTATTGGGAATCGGTTACGGGTGAAACTAAGTTCGCGTTCGCCGAGAAGAGTGGTTTGTGGCGTGTCTATTT
AGACCGCAGTACGCTGCAAACTCGAACGCTAGACAAATACCTACGCGTAGAAACCCTACCAAAAACACCGCGCTGGCGAA
CGGTATTGAGTTCTATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGGACGCATATTGAGATGCTAAGG
GATAAACTGCAGAAACTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• PAS domain (PAS_8) (880-914)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.351	100	0.764