Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   MID13_RS06675 Genome accession   NZ_CP092384
Coordinates   1469270..1470451 (-) Length   393 a.a.
NCBI ID   WP_239717908.1    Uniprot ID   -
Organism   Vibrio gigantis strain ACE001     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1452492..1474767 1469270..1470451 within 0


Gene organization within MGE regions


Location: 1452492..1474767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS06600 (MID13_06600) - 1452492..1454042 (+) 1551 WP_239717896.1 PAS domain-containing methyl-accepting chemotaxis protein -
  MID13_RS06605 (MID13_06605) pnuC 1454324..1455058 (+) 735 WP_239717897.1 nicotinamide riboside transporter PnuC -
  MID13_RS06610 (MID13_06610) - 1455067..1455795 (+) 729 WP_239717898.1 nucleoside phosphorylase -
  MID13_RS06615 (MID13_06615) - 1455924..1456604 (+) 681 WP_239717899.1 Crp/Fnr family transcriptional regulator -
  MID13_RS06620 (MID13_06620) - 1457011..1457154 (-) 144 WP_239717900.1 hypothetical protein -
  MID13_RS06625 (MID13_06625) - 1457179..1457454 (-) 276 WP_086713189.1 HU family DNA-binding protein -
  MID13_RS06630 (MID13_06630) - 1457793..1458488 (-) 696 WP_239717901.1 VC0807 family protein -
  MID13_RS06635 (MID13_06635) - 1458644..1459888 (-) 1245 WP_239717902.1 NADH:flavin oxidoreductase/NADH oxidase family protein -
  MID13_RS06640 (MID13_06640) - 1460085..1460657 (-) 573 WP_239717903.1 YceI family protein -
  MID13_RS06645 (MID13_06645) - 1461110..1462996 (+) 1887 WP_239717904.1 methyl-accepting chemotaxis protein -
  MID13_RS06650 (MID13_06650) - 1463099..1463500 (-) 402 WP_239717905.1 ACT domain-containing protein -
  MID13_RS06655 (MID13_06655) - 1463667..1464560 (-) 894 WP_239717906.1 LysR family transcriptional regulator -
  MID13_RS06660 (MID13_06660) - 1464753..1465655 (+) 903 WP_239717907.1 Vmh family MBL fold metallo-hydrolase -
  MID13_RS06665 (MID13_06665) - 1465957..1466772 (+) 816 WP_086713197.1 TauD/TfdA dioxygenase family protein -
  MID13_RS06670 (MID13_06670) - 1467029..1469077 (+) 2049 WP_086713198.1 response regulator -
  MID13_RS06675 (MID13_06675) cqsA 1469270..1470451 (-) 1182 WP_239717908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MID13_RS06680 (MID13_06680) - 1470721..1472103 (-) 1383 WP_239717909.1 PLP-dependent aminotransferase family protein -
  MID13_RS06685 (MID13_06685) - 1472207..1473100 (+) 894 WP_239717910.1 EamA family transporter -
  MID13_RS06690 (MID13_06690) - 1473143..1473907 (-) 765 WP_239717911.1 helix-turn-helix domain-containing protein -
  MID13_RS06695 (MID13_06695) - 1474036..1474767 (+) 732 WP_146491241.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43563.77 Da        Isoelectric Point: 6.2668

>NTDB_id=657081 MID13_RS06675 WP_239717908.1 1469270..1470451(-) (cqsA) [Vibrio gigantis strain ACE001]
MSDKSATKPLPSFIEERLNFYIQDLITQNQSKKHLVLGKRPQQKSVVMQSNDYLALSHNTQIQKAHQSAICEHDDNVVMS
AIFLQDEQSKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLHDICEMAQEFDCALVVDESHSLGTHGENGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEIIKGAEDKRETLFKRAKSLVAGLKRIGFNIRSESQ
IVALECGNETNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCYEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=657081 MID13_RS06675 WP_239717908.1 1469270..1470451(-) (cqsA) [Vibrio gigantis strain ACE001]
ATGAGTGATAAATCAGCAACAAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTAATTAC
CCAAAACCAAAGCAAAAAGCACTTAGTCTTGGGTAAACGACCTCAGCAAAAATCCGTTGTGATGCAGAGCAATGATTACC
TAGCACTGTCACACAATACGCAGATCCAAAAAGCCCATCAATCAGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTTTTACAAGATGAGCAGTCTAAGCCCGCGTTTGAAACCGAGCTTGCGAGCTATGTTGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCGGCCAATATTGGACTGCTTCAAACCATTTGCCCACCAGGTACACCTGTATACATCGACT
TTCTTGCACATATGTCGCTATGGGAAGGCATTCGCGCTGCAGGCGCTGTTGCCCACCCGTTTATGCACAATAATATGAGC
CACCTACGTAAACAGTTAGAACGTCACGGCTCGGGAGTCATCGTTGTCGACTCGGTTTACAGTACGATTGGCACGATTGC
CCCACTGCACGACATCTGCGAAATGGCGCAAGAGTTTGATTGCGCATTGGTCGTTGATGAATCGCATTCATTGGGGACAC
ACGGGGAAAATGGTGCCGGCTTGGTTCAAGCTCTGGGGCTTACTAACAAAGTGGACTTCATCACCGTCAGCTTGGCAAAG
ACCTTTGCTTATCGGGCAGGCGCAATCCTTGGTCCGAAACAACTTTCAGAAACCTTACCTTTCGTCGCGTACCCTGCGAT
CTTTAGCTCGACAGTGTTACCACAGGAAGTGGTTCGTTTAGAGAAAACTTTAGAGATAATCAAAGGTGCAGAAGACAAAC
GAGAAACCCTGTTCAAGCGGGCAAAATCGCTTGTTGCGGGTCTAAAGCGAATTGGCTTTAATATCCGTAGCGAGTCTCAA
ATTGTGGCGTTGGAGTGCGGCAATGAGACAAATACTGAACGTGTGCGTGACTTCCTAGAAGAACGAGATGTGTTCGGTGC
CGTTTTCTGCCGCCCTGCAACTGGCAAGAACAAAAACATCATTCGCTTTTCAGTGAATGCAGACATGACACCAAGAGATA
TTGACCATGTGCTCACGGTTTGTTATGAAGCGTACAATCACCCGGAATTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55