Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MID02_RS13235 Genome accession   NZ_CP092383
Coordinates   2751139..2751891 (-) Length   250 a.a.
NCBI ID   WP_239819204.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF327     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2746139..2756891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID02_RS13210 (MID02_13210) mreC 2746575..2747438 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  MID02_RS13215 (MID02_13215) mreB 2747469..2748482 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  MID02_RS13220 (MID02_13220) radC 2748574..2749269 (-) 696 WP_003152646.1 DNA repair protein RadC -
  MID02_RS13225 (MID02_13225) - 2749301..2749870 (-) 570 WP_014305513.1 Maf family protein -
  MID02_RS13230 (MID02_13230) - 2750011..2751012 (-) 1002 WP_052586396.1 SPOR domain-containing protein -
  MID02_RS13235 (MID02_13235) comC 2751139..2751891 (-) 753 WP_239819204.1 A24 family peptidase Machinery gene
  MID02_RS13240 (MID02_13240) - 2752031..2753323 (-) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MID02_RS13245 (MID02_13245) - 2753382..2756024 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  MID02_RS13250 (MID02_13250) - 2756477..2756668 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=657051 MID02_RS13235 WP_239819204.1 2751139..2751891(-) (comC) [Bacillus velezensis strain SF327]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQGGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGRA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=657051 MID02_RS13235 WP_239819204.1 2751139..2751891(-) (comC) [Bacillus velezensis strain SF327]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATCCTGCAAGGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGAATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCAGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588