Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA64_RS20510 Genome accession   NZ_CP108242
Coordinates   4550291..4551286 (-) Length   331 a.a.
NCBI ID   WP_356773609.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4545291..4556286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS20495 (OHA64_20420) - 4546143..4546904 (-) 762 WP_405615059.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHA64_RS20500 (OHA64_20425) - 4547105..4548613 (-) 1509 WP_405615062.1 MFS transporter -
  OHA64_RS20505 (OHA64_20430) - 4548677..4549678 (+) 1002 WP_405615064.1 helix-turn-helix transcriptional regulator -
  OHA64_RS20510 (OHA64_20435) rpoS 4550291..4551286 (-) 996 WP_356773609.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHA64_RS20515 (OHA64_20440) - 4551456..4551986 (+) 531 WP_405615066.1 GNAT family N-acetyltransferase -
  OHA64_RS20520 (OHA64_20445) - 4552034..4552849 (-) 816 WP_405615068.1 dioxygenase -
  OHA64_RS20525 (OHA64_20450) - 4552960..4553475 (+) 516 WP_405615070.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHA64_RS20530 (OHA64_20455) - 4553570..4555099 (-) 1530 WP_405615072.1 MFS transporter -
  OHA64_RS20535 (OHA64_20460) - 4555272..4555916 (-) 645 WP_405615074.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37191.97 Da        Isoelectric Point: 5.2478

>NTDB_id=657016 OHA64_RS20510 WP_356773609.1 4550291..4551286(-) (rpoS) [Streptomyces sp. NBC_00076]
MATRAVARRQSATGRTDTASSVRVRGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGYEDAKADA
SREELQALVDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNPERVVDVLDWARDPVSLNMSVDDDGDTQFG
DLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALLELKK
LARSTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=657016 OHA64_RS20510 WP_356773609.1 4550291..4551286(-) (rpoS) [Streptomyces sp. NBC_00076]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGTCGGACCGACACGGCAAGCAGTGTTCGCGTCCGTGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGGAAG
TCGAGCTGTCTCAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGATACGAGGACGCCAAGGCGGATGCC
TCCCGTGAGGAGCTCCAGGCCCTGGTCGACGAGAGTGAGCGTGCCAAGGACGTCTTCATCCGCTCCAACCTCCGTCTGGT
CGTCGCGGTGGCCCGCCGCTATCCCCGCAGTGGGCTGCCTCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTGC
GCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATCACC
CGCTCGATAGCGGACCAGTCGCGCACGATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGTGCA
GCGGGAGTTCAACCGCGAACACGGCCGCGACCCGGAGCCCGCCGAGATCGCCGCCGAGCTCGGCTCGAACCCGGAGCGCG
TCGTGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTCGGC
GATCTCCTGGAGGACACGTCGGCGGTCTCCCCGGAGCAGTCCGTGTTGACCCTGCTGCGCAGCGAGGAGCTCGATGACCT
CATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGTGGACGGCCGGGAACGCACGCTGA
CCGAGGTCGGCAAGGAGCACGGCCTGACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAGAAG
CTGGCGCGGAGCACGGGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(268-320)

Sigma-70 region 3 (Sigma70_r3)

(178-254)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(99-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.332

0.363