Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA64_RS16005 Genome accession   NZ_CP108242
Coordinates   3500202..3502130 (+) Length   642 a.a.
NCBI ID   WP_405613467.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3495202..3507130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS15990 (OHA64_15925) - 3496477..3496782 (+) 306 WP_405613461.1 YtxH domain-containing protein -
  OHA64_RS15995 (OHA64_15930) - 3496856..3498310 (+) 1455 WP_405613463.1 FGGY-family carbohydrate kinase -
  OHA64_RS16000 (OHA64_15935) rcrP 3498469..3500202 (+) 1734 WP_405613465.1 ABC transporter ATP-binding protein Regulator
  OHA64_RS16005 (OHA64_15940) rcrQ 3500202..3502130 (+) 1929 WP_405613467.1 ABC transporter ATP-binding protein Regulator
  OHA64_RS16010 (OHA64_15945) - 3502474..3504174 (+) 1701 WP_405613469.1 IS200/IS605 family accessory protein TnpB-related protein -
  OHA64_RS16015 (OHA64_15950) - 3504150..3505463 (-) 1314 WP_405613471.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69695.19 Da        Isoelectric Point: 5.9143

>NTDB_id=657008 OHA64_RS16005 WP_405613467.1 3500202..3502130(+) (rcrQ) [Streptomyces sp. NBC_00076]
MAGPAGRMMAGTGPDQRSMDFKGSGKRLIGQFKPERLTIYALLFCVVVSVGLSVVGPKILGNATDLVFSGIIGRQMPAGA
TKEEVLRSMRERGDGSVADMLRSTDFTPGKGIDFGAVGEVLLLALIVFVIAGLLMAGATRLVNRAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLVMMFWVSWLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQDESAALFAEQNDALYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGVRPEELRGRVALE
HVSFRYAPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHTDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=657008 OHA64_RS16005 WP_405613467.1 3500202..3502130(+) (rcrQ) [Streptomyces sp. NBC_00076]
ATGGCGGGGCCGGCGGGGCGGATGATGGCCGGGACGGGTCCCGACCAGCGTTCGATGGATTTCAAGGGGTCGGGGAAACG
GCTCATCGGGCAGTTCAAGCCCGAACGGCTGACGATCTACGCGCTGCTGTTCTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TGGTGGGGCCGAAGATCCTCGGCAACGCCACGGACCTGGTCTTCTCGGGCATCATCGGGCGGCAGATGCCGGCCGGGGCC
ACCAAGGAGGAGGTCCTTCGGTCCATGCGGGAGCGGGGTGACGGCTCCGTCGCGGACATGCTCCGCAGCACGGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGTGCCGTCGGCGAGGTGCTGCTGCTCGCGCTGATCGTGTTCGTCATCGCCGGTCTGC
TGATGGCGGGTGCCACCCGGCTGGTGAACCGGGCGGTCAACCGGACGATGTACCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTCACCATCATCGGCGTGCTGGTGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTCGTCGCGCTGGTCACCGTGCCGCTGTCGTTCTTCGTCGCCACCAGGGTGGGAAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGGAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCCGCGCTGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTCGTCGGCGGGCTGCGGGTCGCTTCCGGCACGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCTTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCCGGGCGTGCGGCCGGAGGAACTGCGCGGGCGGGTGGCGCTGGAG
CATGTGTCGTTCCGGTACGCCCCCGAGAAGCCGCTCATCGAGGATCTCTCGCTCACGGTCGAGCCCGGCCACACGGTCGC
GATCGTGGGACCGACGGGAGCGGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCCGGCGGGCGTA
TCACCCTCGACGGCGTCGACATCGCGAGGATGTCCCGGGACGAACTGCGTGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCCGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGAGTTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAACTCGCGCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGGCGATCGTCGAGCAGG
GCACGCACACGGATCTGCTGGCGGCCGACGGGGCGTACGCCCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.388

96.417

0.389