Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA64_RS16000 Genome accession   NZ_CP108242
Coordinates   3498469..3500202 (+) Length   577 a.a.
NCBI ID   WP_405613465.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493469..3505202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS15970 (OHA64_15905) - 3493974..3495788 (+) 1815 WP_405613459.1 tyrosine-type recombinase/integrase -
  OHA64_RS15990 (OHA64_15925) - 3496477..3496782 (+) 306 WP_405613461.1 YtxH domain-containing protein -
  OHA64_RS15995 (OHA64_15930) - 3496856..3498310 (+) 1455 WP_405613463.1 FGGY-family carbohydrate kinase -
  OHA64_RS16000 (OHA64_15935) rcrP 3498469..3500202 (+) 1734 WP_405613465.1 ABC transporter ATP-binding protein Regulator
  OHA64_RS16005 (OHA64_15940) rcrQ 3500202..3502130 (+) 1929 WP_405613467.1 ABC transporter ATP-binding protein Regulator
  OHA64_RS16010 (OHA64_15945) - 3502474..3504174 (+) 1701 WP_405613469.1 IS200/IS605 family accessory protein TnpB-related protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62690.92 Da        Isoelectric Point: 5.9217

>NTDB_id=657007 OHA64_RS16000 WP_405613465.1 3498469..3500202(+) (rcrP) [Streptomyces sp. NBC_00076]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNADIIDDGVVKGDTGYILSFGAVMIGISLVQVVCNIGAVYYGA
RTASALGRDIRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVMGISVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDMSMGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGAMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTSSSVVP
PTAPVRELRRHGHLEIRGAGFHYPGAEEPVLRSIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATAGEVLVDGVSVA
AIEPRLLARTVGMVPQKPYLFAGTVATNLRYGHPDATDEELWHALEVAQAKSFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGTHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657007 OHA64_RS16000 WP_405613465.1 3498469..3500202(+) (rcrP) [Streptomyces sp. NBC_00076]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCTCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCGGACATCATCGACGACGGCGTCGTGAAGGGCGACACCGGCTACA
TCCTGTCCTTCGGCGCCGTGATGATCGGCATATCGCTAGTACAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCCTCGGCGCTGGGACGCGACATCCGGGCCGCGGTCTTCGACCGTGTGCAGTCCTTCTCGGCTCGCGAGCTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CACTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTCGTACCGGTGATGGGCATCAGTGTGACGCTGATCATCCGCAGGCTGCGCCCGCTGTTCCGGTCCATGCA
GGTGCGTCTGGACACGGTGAACCGGGTGCTTCGGGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGACCTGACCGACATGTCGATGGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCCATCGTGATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGCCATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCGGAGCGCATCGAGGAGGTCCTGGACACCTCCTCCAGCGTCGTCCCG
CCGACCGCCCCGGTGCGTGAGCTGCGCCGGCACGGCCATCTGGAGATCCGCGGCGCGGGCTTCCACTACCCGGGTGCCGA
GGAGCCGGTGCTCAGGTCGATCGACCTGGTGGCGCTGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGGA
AGTCCACGCTGCTGGGGCTGGTGCCGAGGCTGTTCGACGCGACCGCCGGGGAGGTGCTCGTCGACGGCGTGAGCGTGGCG
GCCATCGAACCGCGGCTGCTGGCGAGGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTGGCCAC
GAACCTGCGCTACGGCCATCCTGACGCCACCGACGAGGAACTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGAGCTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGGACCAATGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGCACCCTGGTGCAACGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCTCTCTCCCAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGCGTGGCCACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCACGCACCACGAACTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.726

100

0.39