Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AB237_RS11070 | Genome accession | NZ_AP013357 |
| Coordinates | 2277386..2277766 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii NCGM 237 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2272386..2282766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB237_RS11040 (AB237_1935) | tadA | 2272504..2273007 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| AB237_RS11045 (AB237_1936) | - | 2273014..2274138 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AB237_RS11050 (AB237_1937) | ung | 2274135..2274848 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AB237_RS11055 (AB237_1938) | - | 2274899..2275495 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| AB237_RS11060 (AB237_1939) | gspK | 2275726..2276685 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| AB237_RS11065 (AB237_1940) | xcpW | 2276685..2277386 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AB237_RS11070 (AB237_1941) | xcpV | 2277386..2277766 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AB237_RS11075 (AB237_1942) | - | 2277756..2278310 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AB237_RS11080 (AB237_1943) | - | 2278320..2278928 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AB237_RS11085 (AB237_1944) | - | 2278966..2279739 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AB237_RS11090 (AB237_1945) | - | 2279757..2280098 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AB237_RS11095 (AB237_1946) | - | 2280110..2281090 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| AB237_RS11100 (AB237_1947) | kdsB | 2281102..2281863 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=65699 AB237_RS11070 WP_000836911.1 2277386..2277766(-) (xcpV) [Acinetobacter baumannii NCGM 237]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=65699 AB237_RS11070 WP_000836911.1 2277386..2277766(-) (xcpV) [Acinetobacter baumannii NCGM 237]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |