Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU33_RS41920 Genome accession   NZ_CP108237
Coordinates   9084608..9085606 (-) Length   332 a.a.
NCBI ID   WP_266527632.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9079608..9090606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS41900 (OHU33_41800) - 9081499..9081732 (-) 234 WP_405662834.1 hypothetical protein -
  OHU33_RS41905 (OHU33_41805) - 9081766..9083052 (-) 1287 WP_266526371.1 MFS transporter -
  OHU33_RS41910 (OHU33_41810) - 9083209..9083727 (+) 519 WP_405623345.1 hypothetical protein -
  OHU33_RS41915 (OHU33_41815) - 9083739..9084527 (-) 789 WP_266526369.1 YqjF family protein -
  OHU33_RS41920 (OHU33_41820) cytR 9084608..9085606 (-) 999 WP_266527632.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU33_RS41925 (OHU33_41825) - 9085892..9086947 (+) 1056 WP_266526367.1 glycoside hydrolase family 5 protein -
  OHU33_RS41930 (OHU33_41830) - 9087029..9087835 (-) 807 WP_266587255.1 SAM-dependent methyltransferase -
  OHU33_RS41935 (OHU33_41835) - 9087832..9088125 (-) 294 WP_266526365.1 DUF397 domain-containing protein -
  OHU33_RS41940 (OHU33_41840) - 9088122..9089000 (-) 879 WP_405662840.1 helix-turn-helix domain-containing protein -
  OHU33_RS41945 (OHU33_41845) - 9089188..9089634 (+) 447 WP_405662842.1 ATP-binding protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35063.56 Da        Isoelectric Point: 6.2741

>NTDB_id=656975 OHU33_RS41920 WP_266527632.1 9084608..9085606(-) (cytR) [Streptomyces sp. NBC_00079]
MADVAKLAGVSSQTVSRVSNGHSGVITSTREQVLAAMRELGYRPNSAARALRYGQFNTIGVILFSLSSTGNSRTVEAIAT
HAADEGYAITLIPIDVPTQDNVLGAFTRMGELAVDAVIVIMEIHLLDTATVQLPPGVHVVVVDSDAGDRYSVVDTDQADG
ARKAVSHLLDLGHRTVWHVTGPETSFAGQRRTQAWRAVLEAAGRPVPPPLHGDWSAESGYRAGLALAGQPGCTAVFASND
QMALGLLRAFHERGLTVPTDISVVGFDDIPDAAFFVPPLTTVHQDFAEVGRRCVQGALQQIRAHGGSQAGTELVPTTLVV
RDSTAAPPGRPR

Nucleotide


Download         Length: 999 bp        

>NTDB_id=656975 OHU33_RS41920 WP_266527632.1 9084608..9085606(-) (cytR) [Streptomyces sp. NBC_00079]
ATGGCCGACGTCGCCAAGCTCGCGGGCGTGTCGTCGCAGACCGTCTCGCGTGTCTCCAACGGCCATTCCGGAGTGATCAC
CTCGACCCGGGAGCAGGTGCTCGCGGCGATGCGGGAGCTGGGCTACCGGCCAAACAGCGCCGCACGCGCCCTGCGCTACG
GACAGTTCAACACCATCGGCGTGATCCTCTTCAGCCTGTCCTCGACGGGCAACAGCCGTACCGTCGAGGCGATCGCCACG
CATGCCGCGGACGAGGGGTACGCGATCACACTGATCCCCATCGACGTCCCGACCCAGGACAACGTGCTGGGGGCCTTCAC
ACGCATGGGCGAGCTGGCCGTCGACGCCGTCATCGTCATCATGGAGATCCATCTGCTCGACACCGCCACGGTGCAGCTGC
CGCCCGGCGTGCACGTGGTCGTCGTGGACTCCGACGCCGGCGACCGCTACAGCGTGGTCGACACGGACCAGGCCGACGGA
GCGCGCAAGGCCGTCAGCCATCTGCTCGACCTGGGCCACCGAACGGTCTGGCACGTGACCGGCCCCGAGACGTCCTTCGC
CGGCCAGCGTCGCACCCAGGCCTGGCGGGCCGTCCTGGAGGCGGCGGGACGTCCGGTGCCGCCGCCCCTGCACGGCGACT
GGTCGGCCGAGTCCGGCTACAGGGCAGGTCTGGCGCTCGCCGGGCAACCCGGCTGCACGGCCGTGTTCGCCTCCAACGAC
CAGATGGCGCTGGGGCTGTTGCGCGCCTTCCACGAACGGGGTCTGACCGTGCCGACGGACATCAGCGTCGTCGGCTTCGA
CGACATCCCCGACGCCGCCTTCTTCGTCCCGCCCCTCACCACCGTCCACCAGGACTTCGCCGAGGTCGGCCGCCGCTGCG
TCCAGGGCGCCCTCCAGCAGATCCGCGCCCACGGCGGCTCGCAGGCGGGCACCGAACTCGTCCCGACCACCCTGGTCGTC
AGAGACAGCACCGCCGCGCCGCCCGGCCGGCCTCGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-45)

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.693

100

0.364