Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU33_RS32040 Genome accession   NZ_CP108237
Coordinates   6919061..6920794 (-) Length   577 a.a.
NCBI ID   WP_405661289.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6914061..6925794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS32030 (OHU33_31930) - 6915774..6917075 (+) 1302 WP_266513885.1 RNA polymerase sigma factor -
  OHU33_RS32035 (OHU33_31935) rcrQ 6917130..6919061 (-) 1932 WP_328550481.1 ABC transporter ATP-binding protein Regulator
  OHU33_RS32040 (OHU33_31940) rcrP 6919061..6920794 (-) 1734 WP_405661289.1 ABC transporter ATP-binding protein Regulator
  OHU33_RS32045 (OHU33_31945) - 6920910..6922352 (-) 1443 WP_328431432.1 FGGY family carbohydrate kinase -
  OHU33_RS32050 (OHU33_31950) - 6922437..6922742 (-) 306 WP_266513874.1 YtxH domain-containing protein -
  OHU33_RS32070 - 6923599..6923699 (-) 101 Protein_6340 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62415.84 Da        Isoelectric Point: 7.1402

>NTDB_id=656958 OHU33_RS32040 WP_405661289.1 6919061..6920794(-) (rcrP) [Streptomyces sp. NBC_00079]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDQGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASALGRDLRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPTLGICVTLIVRKLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVREEYEKDRFRKSNADLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PAAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGTDVA
SLEPALLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVQKLEAGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIREADRIVVLDGGLVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656958 OHU33_RS32040 WP_405661289.1 6919061..6920794(-) (rcrP) [Streptomyces sp. NBC_00079]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACTCTGAACGCCCACATCATCGACCAAGGCGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCACTGGTCCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGCACCGCCTCCGCACTCGGCCGGGACCTGCGCGCGTCCGTGTTCGACCGGGTGCAGTCCTTCTCGGCGCGGGAGGTCGG
TCACTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGTGTG
CTGATCGCCGTGGTCCCGACGCTGGGCATCTGCGTCACGCTGATCGTGCGGAAGCTGCGACCGCTGTTCCGGGCCATGCA
GGTACGCCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCCTTCGTGCGGGAGG
AGTACGAGAAGGACCGGTTCCGCAAGTCCAACGCCGACCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTTCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGGATCGAGGAGGTGCTCGGGACCTCCTCCAGCGTGGTGCCG
CCGGCGGCTCCGGTCACCGAGCTGCGCCGGCACGGTCACCTGGAGATCCGGGGTGCCGGGTTCCGCTATCCCGGCGCCGA
GGAGCCCGTGCTCAAGGCGGTCGACCTGGTCGCGCGGCCCGGCGAGGTGACCGCCGTCATCGGCTCGACGGGCAGTGGCA
AGTCGACGCTGCTGGGGCTCGTCCCGCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCACGGACGTGGCG
TCCCTCGAACCGGCGCTGCTGGCGAAGACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCAGAAACTCGAAGCCGGGCTCAACGCCCCGATCTCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGACTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGTGCGGCGCTCGCCCAGGAGACCGCGGAAGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGAAGCGGACCGGATCGTCGTCCTCGACGGGGGGCTTGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCGGGCAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.554

100

0.388