Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU33_RS32035 Genome accession   NZ_CP108237
Coordinates   6917130..6919061 (-) Length   643 a.a.
NCBI ID   WP_328550481.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6912130..6924061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS32025 (OHU33_31925) dnaG 6913372..6915270 (+) 1899 WP_266513888.1 DNA primase -
  OHU33_RS32030 (OHU33_31930) - 6915774..6917075 (+) 1302 WP_266513885.1 RNA polymerase sigma factor -
  OHU33_RS32035 (OHU33_31935) rcrQ 6917130..6919061 (-) 1932 WP_328550481.1 ABC transporter ATP-binding protein Regulator
  OHU33_RS32040 (OHU33_31940) rcrP 6919061..6920794 (-) 1734 WP_405661289.1 ABC transporter ATP-binding protein Regulator
  OHU33_RS32045 (OHU33_31945) - 6920910..6922352 (-) 1443 WP_328431432.1 FGGY family carbohydrate kinase -
  OHU33_RS32050 (OHU33_31950) - 6922437..6922742 (-) 306 WP_266513874.1 YtxH domain-containing protein -
  OHU33_RS32070 - 6923599..6923699 (-) 101 Protein_6340 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69572.98 Da        Isoelectric Point: 6.2655

>NTDB_id=656957 OHU33_RS32035 WP_328550481.1 6917130..6919061(-) (rcrQ) [Streptomyces sp. NBC_00079]
MAGPMARMMGQGGGPDSRSLDFKVSGRRLIARFKPERLTIYALLVCVVVSVGLNVIGPKILGKATDLVFAGIIGRQMPAG
ATKEQVLASMRERGQGQVADMLRSTDFTPGKGIDFGAVGNVLLIALCTFLAAGLLMAVATRLVNRAVNRTMYRMREDVQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSALTVIGVLAVMFWVSWLLALVALVTVPLSFVVATRVG
KRSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVRGERPAELRGLVEL
DNISFSYDPDKPLIEHLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIASMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHADLLAADGAYGRLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=656957 OHU33_RS32035 WP_328550481.1 6917130..6919061(-) (rcrQ) [Streptomyces sp. NBC_00079]
ATGGCCGGGCCGATGGCGCGGATGATGGGCCAGGGCGGCGGCCCCGACAGCCGTTCGTTGGACTTCAAGGTGTCGGGCAG
GCGCCTGATCGCCCGGTTCAAACCGGAACGTCTCACGATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTCGGCCTGA
ACGTGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCCGGCATCATCGGGCGTCAGATGCCGGCCGGG
GCCACCAAGGAACAGGTTCTCGCGTCGATGCGGGAGCGGGGGCAGGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTT
CACGCCCGGCAAGGGCATCGACTTCGGCGCCGTGGGCAACGTACTGCTGATCGCGCTGTGTACGTTCCTCGCCGCCGGTC
TGCTGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACCGGACCATGTACCGGATGCGTGAGGACGTGCAGGCG
AAGCTGTCGCGGCTGCCGTTGTCGTACTTCGACAAACGACAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGA
CAACATCGGCCAGACGCTGCAGCAGTCGATGGGCCAGCTCATCAACTCGGCGCTGACCGTCATCGGCGTGCTCGCGGTGA
TGTTCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTCGGC
AAGCGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTCGGTGGTCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCGCGGCGAGCGGCCCGCGGAGCTGCGGGGGCTGGTGGAGCTG
GACAACATCTCCTTCAGCTACGACCCCGACAAGCCGCTGATCGAGCACCTGTCCCTGAAGGCGGAACCCGGGCACACCGT
CGCGATCGTCGGCCCGACGGGAGCCGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTACGACGTGTCCGGCGGGC
GTATCACTCTCGACGGCGTCGACATCGCGAGCATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACGCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCT
CGGGCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTTTCGGACCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCAGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGTCGATCGTGGAAC
AGGGCACCCACGCGGACCTGTTGGCGGCCGACGGGGCGTACGGGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(43-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.871

92.846

0.379