Detailed information NTG0656948

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHU33_RS27680
• Genome accession: NZ_CP108237
• Coordinates: 5935270..5936268 (+)
• Length: 332 a.a.
• NCBI ID: WP_266516034.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00079
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5930270..5941268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU33_RS27655 (OHU33_27545)	-	5930551..5931216 (+)	666	WP_328431676.1	TetR/AcrR family transcriptional regulator	-
OHU33_RS27660 (OHU33_27550)	-	5931355..5932902 (+)	1548	WP_266583856.1	MFS transporter	-
OHU33_RS27665 (OHU33_27555)	-	5933011..5933541 (-)	531	WP_266516042.1	MarR family winged helix-turn-helix transcriptional regulator	-
OHU33_RS27670 (OHU33_27560)	-	5933681..5934472 (+)	792	WP_266516039.1	dioxygenase	-
OHU33_RS27675 (OHU33_27565)	-	5934556..5935074 (-)	519	WP_328431675.1	N-acetyltransferase family protein	-
OHU33_RS27680 (OHU33_27570)	rpoS	5935270..5936268 (+)	999	WP_266516034.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OHU33_RS27685 (OHU33_27575)	-	5936902..5937525 (+)	624	WP_266842155.1	TetR/AcrR family transcriptional regulator	-
OHU33_RS27690 (OHU33_27580)	-	5937879..5938001 (+)	123	WP_266516031.1	hypothetical protein	-
OHU33_RS27695 (OHU33_27585)	-	5938100..5939065 (-)	966	WP_266516028.1	YafY family protein	-
OHU33_RS27700 (OHU33_27590)	-	5939128..5940702 (+)	1575	WP_266516026.1	MFS transporter	-
OHU33_RS27705 (OHU33_27595)	-	5940833..5941033 (+)	201	WP_266516023.1	hypothetical protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37172.96 Da
• Isoelectric Point: 5.0564

>NTDB_id=656948 OHU33_RS27680 WP_266516034.1 5935270..5936268(+) (rpoS) [Streptomyces sp. NBC_00079]
MATRAVARRKSATGETADAASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGDEESKAE
ASREELQALVDDGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELDTKPERVIDVLDWARDPVSLNMAVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=656948 OHU33_RS27680 WP_266516034.1 5935270..5936268(+) (rpoS) [Streptomyces sp. NBC_00079]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAAGCAGTGTTCGCGCTCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCTGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGAGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTTCAGGCCCTGGTCGACGACGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGGCGCTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGACTGG
TGCGCGCAGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCGGAGCTCGACACGAAGCCGGAGC
GCGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGGCCGTGGACGACGAGGGCGAGACCCAGTTC
GGTGACCTGCTGGAGGACACCTCGGCGGTCTCCCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAGCTCGACCA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACGGAGGTCGGCAAGGAACACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCCCGGTCCACGGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	90.06	0.361