Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU33_RS13990 Genome accession   NZ_CP108237
Coordinates   2991505..2992284 (+) Length   259 a.a.
NCBI ID   WP_266522463.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2986505..2997284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS13975 (OHU33_13880) - 2986680..2987213 (+) 534 WP_266522470.1 TerD family protein -
  OHU33_RS13980 (OHU33_13885) - 2987322..2990216 (-) 2895 WP_266522468.1 vitamin B12-dependent ribonucleotide reductase -
  OHU33_RS13985 (OHU33_13890) nrdR 2990380..2990940 (-) 561 WP_266522465.1 transcriptional regulator NrdR -
  OHU33_RS13990 (OHU33_13895) dinR/lexA 2991505..2992284 (+) 780 WP_266522463.1 transcriptional repressor LexA Regulator
  OHU33_RS13995 (OHU33_13900) - 2992530..2994506 (-) 1977 WP_266590397.1 ATP-dependent DNA helicase -
  OHU33_RS14000 (OHU33_13905) - 2994967..2995779 (-) 813 WP_266522459.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27974.70 Da        Isoelectric Point: 7.0668

>NTDB_id=656913 OHU33_RS13990 WP_266522463.1 2991505..2992284(+) (dinR/lexA) [Streptomyces sp. NBC_00079]
MTTTADSATITAQDRSQGRLEPVHAMNEPVSPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=656913 OHU33_RS13990 WP_266522463.1 2991505..2992284(+) (dinR/lexA) [Streptomyces sp. NBC_00079]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
TGAACCCGTGAGCCCCGAGGGGCACAAGCGCTCCTTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGGCTCA
CCGACCGGCAGCGTCGGGTGATCGAGGTCATCAGGGATTCCGTACAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGACTGTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCACACCGCCCACGCGCGTACGAGGTCCGCGGTTCTGACCAGGGCGCCTCCGCGCAGCCCACCGACACCGCGGGCA
AGCCTGCCGCGTCGTATGTCCCATTGGTGGGCCGTATCGCCGCCGGCGGCCCCATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCACTCCCCCGCCAGCTGGTCGGTGACGGAGAGCTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTGCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCGGCCATGCTCG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTATGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375