Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MC269_RS15770 Genome accession   NZ_CP092373
Coordinates   3305285..3306667 (-) Length   460 a.a.
NCBI ID   WP_081142323.1    Uniprot ID   A0A1V9D961
Organism   Pantoea sp. Z09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3300285..3311667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC269_RS15755 - 3301160..3302317 (+) 1158 WP_239952971.1 mandelate racemase/muconate lactonizing enzyme family protein -
  MC269_RS15760 - 3302310..3303596 (+) 1287 WP_239952972.1 MFS transporter -
  MC269_RS15765 nadR 3303997..3305235 (-) 1239 WP_239952973.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  MC269_RS15770 radA 3305285..3306667 (-) 1383 WP_081142323.1 DNA repair protein RadA Machinery gene
  MC269_RS15775 serB 3306678..3307655 (-) 978 WP_239952974.1 phosphoserine phosphatase -
  MC269_RS15780 - 3307764..3308423 (+) 660 WP_081142319.1 YtjB family periplasmic protein -
  MC269_RS15785 yjjJ 3308420..3309733 (-) 1314 WP_239952975.1 type II toxin-antitoxin system HipA family toxin YjjJ -
  MC269_RS15790 yjjG 3309845..3310525 (-) 681 WP_239952976.1 pyrimidine 5'-nucleotidase -
  MC269_RS15795 rimI 3310543..3310983 (-) 441 WP_081142313.1 ribosomal protein S18-alanine N-acetyltransferase -
  MC269_RS15800 - 3310955..3311365 (-) 411 WP_081142311.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49317.91 Da        Isoelectric Point: 7.4215

>NTDB_id=656913 MC269_RS15770 WP_081142323.1 3305285..3306667(-) (radA) [Pantoea sp. Z09]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGVSRVQKLSEISLEALPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQEMKTLYVTGEESLQQVAMRAHRLGLPSENLNMLSETSIE
QICQIAEQEEPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGDEVTAGSSVMVVWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKAVDGMKVYSAKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656913 MC269_RS15770 WP_081142323.1 3305285..3306667(-) (radA) [Pantoea sp. Z09]
TTGGCCAAAGCGGCAAAACGCGCCTTCGTTTGTAACGAATGCGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCCTGGAACACCATCACCGAAGTGCGGATTGCGGCGTCGCCGGCGGCGGCGCGCAATGAGCGCCTGAGCGGCT
ACGCCGGCAGCGCGGGCGTCAGCCGGGTGCAGAAGCTGTCGGAAATCAGCCTGGAGGCGCTGCCGCGCTTCTCCACCGGC
TTTAAAGAGTTCGACCGCGTGCTGGGTGGCGGCGTGGTGCCGGGCAGCGCCATCCTGATCGGCGGTAACCCCGGCGCGGG
TAAATCGACGCTGCTGCTGCAGGTGATGTGTCGTCTGGCGCAGGAGATGAAAACCCTCTACGTCACCGGCGAAGAGTCGC
TGCAGCAGGTGGCGATGCGCGCCCACCGCCTCGGTCTGCCAAGCGAAAACCTCAACATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCAGATCGCCGAGCAGGAAGAGCCGAAGCTGATGGTGATCGACTCCATCCAGGTGATGCACATGGCGGATAT
CCAGTCGTCGCCCGGCAGCGTGGCGCAGGTGCGCGAAACCGCCGCCTATCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATCGTCATGGTCGGTCACGTTACCAAAGATGGCTCGCTGGCCGGTCCGAAAGTGCTTGAACACTGCATCGACTGCTCG
GTGCTGCTGGACGGCGACGCCGACTCGCGCTTCCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCGGTCAACGAGCT
GGGCGTGTTCGCCATGACCGAGCAGGGGATGCGCGAAGTCAGCAACCCGTCGGCGATCTTCCTGTCGCGCGGCGACGAGG
TCACCGCCGGCAGCTCCGTGATGGTGGTGTGGGAAGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATCAC
TCAATGATGGGCAACCCGCGCCGCGTCGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATCCTGCTGGCGGTGCTGCACCG
TCACGGCGGCCTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTGAAGGTCACCGAAACCAGCGCCG
ATCTGGCGCTGCTGCTGGCGATGGTGTCGAGCCTGCGCGACCGTCCACTGCCGCAGGATCTGGTGATCTTCGGTGAAGTC
GGGCTGGCGGGCGAGATCCGACCGGTGCCGAGCGGTCAGGAGCGCATCTCTGAAGCGGCCAAGCACGGCTTTAAGCGCGC
CATCGTGCCGGCCGGCAACGCGCCGAAAAAAGCGGTCGACGGCATGAAAGTTTACAGCGCGAAAAAACTGGCGGACGCGC
TGGCGATACTGGATGAGCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9D961

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.491

100

0.489
  radA Streptococcus mitis NCTC 12261

43.736

98.913

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424