Detailed information NTG0656893

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MG290_RS08615
• Genome accession: NZ_CP092370
• Coordinates: 1730328..1731689 (-)
• Length: 453 a.a.
• NCBI ID: WP_264560916.1
• Uniprot ID: -
• Organism: Flavobacterium sp. CBA20B-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1725328..1736689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MG290_RS08610 (MG290_08585)	-	1728444..1730114 (-)	1671	WP_264560915.1	mucoidy inhibitor MuiA family protein	-
MG290_RS08615 (MG290_08590)	radA	1730328..1731689 (-)	1362	WP_264560916.1	DNA repair protein RadA	Machinery gene
MG290_RS08620 (MG290_08595)	-	1731879..1732532 (-)	654	WP_264560917.1	DUF6705 family protein	-
MG290_RS08625 (MG290_08600)	-	1732574..1733227 (-)	654	WP_264560918.1	DUF6705 family protein	-
MG290_RS08630 (MG290_08605)	-	1733269..1733922 (-)	654	WP_264560919.1	DUF6705 family protein	-
MG290_RS08635 (MG290_08610)	-	1733934..1735628 (-)	1695	WP_264560920.1	hypothetical protein	-
MG290_RS08640 (MG290_08615)	-	1735774..1736100 (+)	327	WP_264560921.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49859.50 Da
• Isoelectric Point: 5.8735

>NTDB_id=656893 MG290_RS08615 WP_264560916.1 1730328..1731689(-) (radA) [Flavobacterium sp. CBA20B-1]
MAKVKTAFFCSSCGTQFSKWLGQCTACKQWNTIVEEVIQKEEKVAWQTKSSAGIKRAAKPLLINEIDSTQEIRLNTLDQE
LNRVLGGGIVPGSMILLGGEPGIGKSTLLLQLSLKLPYKVLYVSGEESQKQIKMRAERINPNNNSCYILTETNTQNIFKQ
VEEIEPDVLIIDSIQTLHTDYIEASAGSISQIKETTAELIKFAKETSTPVILIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHVYRILRALKNRFGSTAELGIYEMLGSGLREVSNPSEILLSNREEELSGTAIASTLEGMRPLMIEIQALVSTAVYGT
PQRSATGYNLKRLNMILAVLEKRAGFRLGMKDVFLNITGGISVDDPAIDLAVVASILSSNEDDAISKDICFAGEVGLSGE
IRPVNRVDQRIQEAEKLGFAKIFVSKYNKITYSSKNIQIVLVSKIEELVSALF

Nucleotide

• Length: 1362 bp

>NTDB_id=656893 MG290_RS08615 WP_264560916.1 1730328..1731689(-) (radA) [Flavobacterium sp. CBA20B-1]
ATGGCAAAAGTAAAAACAGCATTTTTCTGCTCATCTTGTGGCACGCAATTTTCTAAATGGTTGGGGCAATGTACCGCTTG
TAAACAGTGGAATACAATTGTGGAAGAAGTAATTCAGAAAGAAGAAAAAGTGGCATGGCAAACCAAATCTTCAGCAGGAA
TTAAACGCGCAGCAAAACCATTGTTGATCAATGAAATAGACAGCACCCAAGAAATTCGTTTAAACACTTTAGACCAAGAA
TTAAACCGGGTTTTAGGCGGGGGAATTGTTCCCGGATCTATGATTTTATTGGGCGGTGAACCCGGCATTGGTAAAAGTAC
TTTGCTTTTGCAATTGTCGTTAAAATTGCCTTATAAAGTGTTGTATGTTTCGGGAGAAGAAAGCCAAAAACAAATAAAAA
TGCGTGCCGAACGCATCAATCCAAACAACAATTCGTGTTATATTTTAACCGAAACCAATACCCAAAATATTTTTAAGCAG
GTAGAAGAAATCGAACCCGATGTATTGATTATCGATTCGATCCAAACCTTGCATACCGATTATATCGAAGCTTCGGCTGG
TAGCATTTCTCAGATAAAAGAAACCACTGCCGAACTGATTAAGTTTGCAAAAGAAACATCAACGCCGGTTATTTTGATCG
GTCATATCACGAAAGATGGAAACATTGCCGGACCCAAAATTCTAGAACACATGGTGGATACCGTACTGCAGTTTGAAGGC
GACCGCAATCATGTGTACCGAATTCTTCGTGCCTTAAAAAACCGTTTTGGATCTACAGCCGAATTGGGAATTTACGAAAT
GTTAGGATCGGGTTTACGTGAAGTATCGAATCCGTCTGAAATATTATTATCAAACAGAGAAGAAGAGTTATCGGGAACGG
CGATTGCATCAACTTTAGAAGGCATGCGTCCATTAATGATTGAAATTCAAGCATTGGTAAGCACTGCGGTTTACGGTACA
CCACAGCGCAGCGCCACTGGTTACAACTTAAAACGCTTGAACATGATTTTGGCAGTATTGGAAAAGCGGGCGGGTTTTCG
TTTAGGAATGAAAGATGTGTTTTTAAACATTACCGGTGGAATTTCGGTTGATGATCCAGCGATTGATTTAGCTGTTGTGG
CTTCCATTTTATCATCAAACGAAGACGATGCTATTTCAAAAGACATTTGTTTTGCAGGCGAAGTAGGTTTGTCTGGCGAA
ATTCGACCGGTAAACCGGGTAGATCAACGCATTCAGGAAGCCGAAAAATTAGGCTTTGCTAAAATATTTGTATCAAAATA
TAACAAAATCACCTATTCATCAAAAAACATACAAATAGTATTGGTATCTAAAATAGAAGAGCTGGTTTCGGCATTGTTTT
AA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (339-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• AAA domain (AAA_25) (67-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae D39	49.672	100	0.501
radA	Streptococcus mitis NCTC 12261	49.672	100	0.501
radA	Streptococcus pneumoniae Rx1	49.672	100	0.501
radA	Streptococcus pneumoniae R6	49.672	100	0.501
radA	Streptococcus pneumoniae TIGR4	49.672	100	0.501
radA	Streptococcus mitis SK321	49.453	100	0.499
radA	Bacillus subtilis subsp. subtilis str. 168	48.559	99.558	0.483