Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU34_RS38355 Genome accession   NZ_CP108235
Coordinates   8588646..8589677 (-) Length   343 a.a.
NCBI ID   WP_405770760.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8583646..8594677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS38345 (OHU34_38315) - 8584596..8585678 (+) 1083 WP_405770755.1 tartrate dehydrogenase -
  OHU34_RS38350 (OHU34_38320) - 8586301..8588607 (-) 2307 WP_405770757.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHU34_RS38355 (OHU34_38325) cytR 8588646..8589677 (-) 1032 WP_405770760.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU34_RS38360 (OHU34_38330) - 8589917..8591242 (+) 1326 WP_405770763.1 extracellular solute-binding protein -
  OHU34_RS38365 (OHU34_38335) - 8591293..8592138 (+) 846 WP_405772502.1 carbohydrate ABC transporter permease -
  OHU34_RS38370 (OHU34_38340) - 8592138..8593052 (+) 915 WP_405770766.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 35926.88 Da        Isoelectric Point: 5.4235

>NTDB_id=656887 OHU34_RS38355 WP_405770760.1 8588646..8589677(-) (cytR) [Streptomyces sp. NBC_00080]
MAKTAVGRNRTTLTGIAEAAGVSVATVSKVVNGRSDVSPETRARIERLLVENDYVARGPGGIQAPVRTIDLTFDQLVNPN
DLVIMRGVTEAAADAGVDVVVGVTPDDPLGASWARKVTNAGREGVILVTSELTPQQRAQFAQAGIPLVLIDPMNVPDESV
PSIGATNFSGGMAATAHLLKLGHRRIAMIEGRHDAVCNTARLHGYQAALGGAGITPDPALIKRGDFRFEPAYQAALELFA
LDEPPTAIFTGNDLEAFGVMEAARANGLRIPDDLSVVGFDDTVAAGTSAPPLTTVRQPLAEIGRAALRTLLRLAAGETLD
SHRIELATQLIVRASTAPPKSNT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=656887 OHU34_RS38355 WP_405770760.1 8588646..8589677(-) (cytR) [Streptomyces sp. NBC_00080]
ATGGCGAAGACAGCCGTCGGTCGGAACCGGACCACGCTGACCGGCATCGCCGAAGCGGCCGGTGTCTCCGTGGCCACGGT
GTCGAAGGTGGTCAACGGCCGCAGTGACGTGTCCCCCGAGACCCGGGCCCGCATCGAGCGTCTGCTCGTCGAGAACGACT
ACGTGGCAAGAGGGCCGGGCGGAATCCAGGCTCCGGTCCGTACCATCGACCTGACCTTCGACCAGCTGGTCAACCCCAAC
GACCTGGTGATCATGCGCGGCGTCACAGAGGCCGCCGCCGACGCGGGGGTCGACGTCGTCGTCGGCGTGACACCCGACGA
CCCGCTGGGCGCCTCGTGGGCACGGAAGGTCACCAACGCCGGGCGGGAGGGCGTCATCCTCGTGACCTCCGAACTGACCC
CCCAACAGCGGGCGCAGTTCGCGCAGGCCGGCATCCCGCTGGTGCTCATCGATCCGATGAACGTGCCCGACGAGTCCGTA
CCGAGCATCGGCGCGACCAACTTCAGCGGCGGTATGGCCGCCACCGCACATCTGCTGAAGCTCGGGCACCGCCGGATCGC
GATGATCGAGGGCCGACACGACGCGGTCTGCAACACCGCCCGTCTGCACGGCTACCAGGCCGCACTCGGCGGCGCCGGGA
TCACCCCCGACCCCGCCCTCATCAAGCGCGGCGACTTCCGCTTCGAACCCGCCTACCAGGCTGCGCTCGAGCTCTTCGCG
CTGGACGAGCCCCCCACCGCCATCTTCACGGGCAACGACCTGGAAGCGTTCGGCGTCATGGAGGCCGCCAGGGCAAACGG
GCTGCGCATCCCCGACGACCTCAGCGTCGTCGGATTCGACGACACCGTCGCCGCCGGCACCTCGGCCCCACCGCTGACCA
CCGTGCGCCAGCCGCTGGCCGAGATCGGCCGTGCCGCCCTGCGCACGCTGCTGCGCCTGGCGGCGGGAGAGACACTCGAC
AGCCACCGGATCGAGCTGGCCACGCAGCTCATCGTCCGGGCCTCCACCGCCCCGCCGAAGTCCAACACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-336)

Bacterial regulatory proteins, lacI family (LacI)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.686

98.542

0.362