Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MID01_RS19285 Genome accession   NZ_CP092369
Coordinates   3678829..3679551 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZW     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3673829..3684551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS19250 (MID01_19250) fliW 3673968..3674399 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MID01_RS19255 (MID01_19255) yviE 3674420..3674995 (-) 576 WP_041850476.1 DUF6470 family protein -
  MID01_RS19260 (MID01_19260) flgL 3675042..3675938 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MID01_RS19265 (MID01_19265) flgK 3675949..3677472 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MID01_RS19270 (MID01_19270) flgN 3677491..3677973 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MID01_RS19275 (MID01_19275) flgM 3677989..3678255 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  MID01_RS19280 (MID01_19280) yvyF 3678336..3678755 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MID01_RS19285 (MID01_19285) comFC 3678829..3679551 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  MID01_RS19290 (MID01_19290) comFB 3679515..3679811 (-) 297 WP_003227989.1 late competence protein ComFB -
  MID01_RS19295 (MID01_19295) comFA 3679871..3681262 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  MID01_RS19300 (MID01_19300) fakBA 3681368..3682213 (-) 846 WP_003227986.1 DegV family protein -
  MID01_RS19305 (MID01_19305) degU 3682311..3683000 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MID01_RS19310 (MID01_19310) degS 3683083..3684240 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=656878 MID01_RS19285 WP_014481051.1 3678829..3679551(-) (comFC) [Bacillus subtilis strain ZW]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=656878 MID01_RS19285 WP_014481051.1 3678829..3679551(-) (comFC) [Bacillus subtilis strain ZW]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992