Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB237_RS01675 Genome accession   NZ_AP013357
Coordinates   362632..363450 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii NCGM 237     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357632..368450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB237_RS20030 - 358215..358344 (-) 130 Protein_316 hypothetical protein -
  AB237_RS01645 (AB237_0300) rpoZ 358383..358661 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB237_RS01650 (AB237_0301) gmk 358734..359363 (-) 630 WP_000015937.1 guanylate kinase -
  AB237_RS01655 (AB237_0302) ispH 359486..360436 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB237_RS01660 fimU 360606..361079 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB237_RS01665 (AB237_0303) pilV 361073..361633 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  AB237_RS01670 (AB237_0304) pilW 361634..362635 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  AB237_RS01675 pilX 362632..363450 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB237_RS01680 (AB237_0305) pilY1 363462..367316 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  AB237_RS01685 (AB237_0306) pilY2 367329..367811 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  AB237_RS01690 pilE 367808..368233 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=65687 AB237_RS01675 WP_000149374.1 362632..363450(+) (pilX) [Acinetobacter baumannii NCGM 237]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=65687 AB237_RS01675 WP_000149374.1 362632..363450(+) (pilX) [Acinetobacter baumannii NCGM 237]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment