Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU34_RS28435 Genome accession   NZ_CP108235
Coordinates   6368386..6370119 (-) Length   577 a.a.
NCBI ID   WP_142264186.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6363386..6375119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS28425 (OHU34_28410) - 6365052..6366364 (+) 1313 Protein_5609 RNA polymerase sigma factor -
  OHU34_RS28430 (OHU34_28415) rcrQ 6366458..6368386 (-) 1929 WP_142264187.1 ABC transporter ATP-binding protein Regulator
  OHU34_RS28435 (OHU34_28420) rcrP 6368386..6370119 (-) 1734 WP_142264186.1 ABC transporter ATP-binding protein Regulator
  OHU34_RS28440 (OHU34_28425) - 6370342..6371799 (-) 1458 WP_028806369.1 FGGY-family carbohydrate kinase -
  OHU34_RS28445 (OHU34_28430) - 6371968..6372273 (-) 306 WP_142264185.1 YtxH domain-containing protein -
  OHU34_RS28465 (OHU34_28450) - 6373551..6373886 (-) 336 WP_142264184.1 YnfA family protein -
  OHU34_RS28470 (OHU34_28455) - 6374091..6374609 (-) 519 WP_142264183.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62315.49 Da        Isoelectric Point: 5.7775

>NTDB_id=656868 OHU34_RS28435 WP_142264186.1 6368386..6370119(-) (rcrP) [Streptomyces sp. NBC_00080]
MLIRLLRTYLRPYKKPIALLVGLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSFGGVMIAISLAQVVCNIGAVYYGA
RTAAALGRDVRGAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEFEQQRFRKANADLTDVSLKSGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVA
EVDPVLLAKTVGLVPQRPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALGRETAEATVVIVAQRVATIRDADRIIVLDEGLVVGTGSHRELMAAN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656868 OHU34_RS28435 WP_142264186.1 6368386..6370119(-) (rcrP) [Streptomyces sp. NBC_00080]
GTGCTCATACGACTACTACGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTCGTGGGGCTCCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACACTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGAGACACCGGATACA
TCCTGTCCTTCGGCGGCGTGATGATCGCCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGCGCCGTGTACTACGGCGCC
AGAACCGCTGCCGCGCTCGGCCGGGACGTGCGGGGGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCCTCGCTGATCACCCGGACGACGAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGGTGGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGCTCGATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
AGTTCGAACAGCAGCGGTTCCGCAAGGCCAACGCCGACCTCACCGACGTCTCGCTGAAGAGCGGCAACCTCCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGTGCCCATCGGATCGACAGCGG
TGGGATGCAGATCGGCGATCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTGCCG
CCGGTGGCTCCCGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGGGGCCGGATTCCGCTACCCCGGCGCCGA
GGAGCCCGTCCTGAAGTCCATCGAGCTCGTGGCGCGCCCGGGTGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTGCTCGTGGACGGCGTGGCCGTCGCC
GAGGTCGACCCGGTGCTGCTGGCGAAGACCGTCGGACTCGTACCGCAGAGGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCCCAGGCCAAGGGCTTCG
TGGAGGGTCTGGAGAACGGGCTCGACTCCCCCATCGCGCAGGGCGGGACGAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACCCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCACTGCGGACGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCTCGTCGTCGGCACGGGTAGCCACCGCGAGCTGATGGCGGCGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.071

97.747

0.392