Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU34_RS28430 Genome accession   NZ_CP108235
Coordinates   6366458..6368386 (-) Length   642 a.a.
NCBI ID   WP_142264187.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6361458..6373386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS28415 (OHU34_28400) - 6361653..6362918 (+) 1266 WP_405768920.1 NAD(P)/FAD-dependent oxidoreductase -
  OHU34_RS28420 (OHU34_28405) dnaG 6363054..6364949 (+) 1896 WP_142264189.1 DNA primase -
  OHU34_RS28425 (OHU34_28410) - 6365052..6366364 (+) 1313 Protein_5609 RNA polymerase sigma factor -
  OHU34_RS28430 (OHU34_28415) rcrQ 6366458..6368386 (-) 1929 WP_142264187.1 ABC transporter ATP-binding protein Regulator
  OHU34_RS28435 (OHU34_28420) rcrP 6368386..6370119 (-) 1734 WP_142264186.1 ABC transporter ATP-binding protein Regulator
  OHU34_RS28440 (OHU34_28425) - 6370342..6371799 (-) 1458 WP_028806369.1 FGGY-family carbohydrate kinase -
  OHU34_RS28445 (OHU34_28430) - 6371968..6372273 (-) 306 WP_142264185.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69492.81 Da        Isoelectric Point: 5.4240

>NTDB_id=656867 OHU34_RS28430 WP_142264187.1 6366458..6368386(-) (rcrQ) [Streptomyces sp. NBC_00080]
MAGPMGRMMAGTGPDSHSLDFKVSGRRLLAQFKPERFTLYAMLACVTLSVGLSVVGPKILGKATDLVFAGIVGRQMPAGA
SKEQVLDSMRERGEGSVADMLRSTDFTPGKGIDFGSVGEVLLLALGVFLVAGLLMAVATRLVNRSVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTVIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERVFELLDAEEQEADPVAAERPAELRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASGEVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAADGAYARLYKAQFAQALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=656867 OHU34_RS28430 WP_142264187.1 6366458..6368386(-) (rcrQ) [Streptomyces sp. NBC_00080]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGCACCGGTCCCGACAGCCACTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGCCCAGTTCAAGCCGGAGCGGTTCACCCTCTACGCGATGCTGGCCTGCGTGACGCTGAGCGTCGGACTCAGCG
TGGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGGCAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTCCTCGACTCGATGCGGGAACGCGGCGAGGGCAGCGTCGCCGACATGCTCAGGAGTACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGCTCGGTCGGCGAGGTCCTGCTGCTCGCGCTCGGGGTGTTCCTGGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACAGGTCCGTCAACCGCACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTGTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTGCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTGACCGTCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCACTGTCGTTCGTCGTCGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGTCA
CACGCTGGTGAAGGTGTTCGGCCGCCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGCGTCGCGTCGGGTTCCCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGCTCGCGTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTGGCGGCCGAGCGGCCCGCGGAGCTGCGCGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGCCCGACGGGGGCCGGCAAGACGACGCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCACCCTCGACGGTGTCGACATAGCGAGGATGTCCCGCGACGAACTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGGGTGAGGTCACCCGCGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTTCCGGACGGCTACGACACGGTCATCGACGACGAGGGCAGCG
GGGTCTCCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGACGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGG
GTGCGCACACCGACCTGCTGGCGGCGGACGGGGCCTACGCACGGCTGTACAAGGCACAGTTCGCGCAGGCACTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.486

84.891

0.369