Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MID01_RS10120 Genome accession   NZ_CP092369
Coordinates   2038886..2040016 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZW     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2037521..2060302 2038886..2040016 within 0


Gene organization within MGE regions


Location: 2037521..2060302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS10110 (MID01_10110) - 2037521..2037895 (+) 375 WP_021481445.1 YoqO family protein -
  MID01_RS22335 - 2038607..2038753 (+) 147 Protein_1943 phage holin -
  MID01_RS10120 (MID01_10120) rapC 2038886..2040016 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  MID01_RS10125 (MID01_10125) - 2040006..2040149 (+) 144 WP_153801665.1 hypothetical protein -
  MID01_RS10130 (MID01_10130) - 2040303..2040503 (-) 201 WP_021481449.1 hypothetical protein -
  MID01_RS10135 (MID01_10135) - 2040725..2041099 (-) 375 Protein_1947 UV damage repair protein UvrX -
  MID01_RS10140 (MID01_10140) - 2041097..2041252 (-) 156 Protein_1948 T7SS effector LXG polymorphic toxin -
  MID01_RS10145 (MID01_10145) yobM 2041353..2041910 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  MID01_RS10150 (MID01_10150) yobN 2042038..2043474 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  MID01_RS10155 (MID01_10155) csaA 2043724..2044056 (-) 333 WP_032725963.1 chaperone CsaA -
  MID01_RS10160 (MID01_10160) yobQ 2044121..2044846 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  MID01_RS10165 (MID01_10165) yobR 2044861..2045601 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  MID01_RS10170 (MID01_10170) yobS 2045679..2046254 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  MID01_RS10175 (MID01_10175) yobT 2046260..2046961 (-) 702 WP_015714087.1 MBL fold metallo-hydrolase -
  MID01_RS10180 (MID01_10180) yobU 2047037..2047519 (-) 483 WP_239795073.1 GyrI-like domain-containing protein -
  MID01_RS10185 (MID01_10185) yobV 2047573..2048511 (-) 939 WP_015714088.1 YafY family protein -
  MID01_RS10190 (MID01_10190) csk22 2048716..2049261 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  MID01_RS10195 (MID01_10195) czrA 2049288..2049611 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  MID01_RS10200 (MID01_10200) yocA 2049806..2050483 (+) 678 WP_014480011.1 lysozyme family protein -
  MID01_RS10205 (MID01_10205) yozB 2050573..2051109 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  MID01_RS10210 (MID01_10210) yocB 2051246..2052028 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  MID01_RS10215 (MID01_10215) yocC 2052199..2052696 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  MID01_RS10220 (MID01_10220) yocD 2052760..2053737 (+) 978 WP_015714091.1 LD-carboxypeptidase -
  MID01_RS10225 (MID01_10225) desE 2053900..2054958 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  MID01_RS10230 (MID01_10230) desK 2055078..2056190 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  MID01_RS10235 (MID01_10235) desR 2056209..2056808 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  MID01_RS10240 (MID01_10240) walL 2057416..2058279 (-) 864 WP_014480017.1 3D domain-containing protein -
  MID01_RS10245 (MID01_10245) recQ 2058527..2060302 (-) 1776 WP_015714092.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=656847 MID01_RS10120 WP_021481447.1 2038886..2040016(+) (rapC) [Bacillus subtilis strain ZW]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=656847 MID01_RS10120 WP_021481447.1 2038886..2040016(+) (rapC) [Bacillus subtilis strain ZW]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455