Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU34_RS19575 Genome accession   NZ_CP108235
Coordinates   4400496..4401095 (-) Length   199 a.a.
NCBI ID   WP_020129225.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4395496..4406095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS19540 (OHU34_19550) - 4395959..4396690 (+) 732 WP_142265411.1 response regulator transcription factor -
  OHU34_RS19545 (OHU34_19555) - 4396687..4398054 (+) 1368 WP_230195044.1 HAMP domain-containing sensor histidine kinase -
  OHU34_RS19550 (OHU34_19560) - 4398020..4398517 (-) 498 WP_230195045.1 SgcJ/EcaC family oxidoreductase -
  OHU34_RS19555 (OHU34_19565) - 4398626..4398814 (-) 189 WP_142265408.1 hypothetical protein -
  OHU34_RS19560 (OHU34_19570) - 4398928..4399659 (+) 732 WP_142265407.1 sulfite exporter TauE/SafE family protein -
  OHU34_RS19565 (OHU34_19575) - 4399672..4399818 (-) 147 WP_160159992.1 hypothetical protein -
  OHU34_RS19570 (OHU34_19580) - 4399841..4400503 (-) 663 WP_142265406.1 DUF5063 domain-containing protein -
  OHU34_RS19575 (OHU34_19585) recR 4400496..4401095 (-) 600 WP_020129225.1 recombination mediator RecR Machinery gene
  OHU34_RS19580 (OHU34_19590) - 4401177..4401521 (-) 345 WP_028806749.1 YbaB/EbfC family nucleoid-associated protein -
  OHU34_RS19585 (OHU34_19595) - 4401840..4402574 (+) 735 WP_372481721.1 SLATT domain-containing protein -
  OHU34_RS19590 (OHU34_19600) - 4402746..4404614 (-) 1869 WP_405767501.1 protein kinase domain-containing protein -
  OHU34_RS19595 (OHU34_19605) - 4404708..4405175 (-) 468 WP_142265403.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHU34_RS19600 (OHU34_19610) - 4405172..4405780 (-) 609 WP_142265402.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21739.15 Da        Isoelectric Point: 4.9908

>NTDB_id=656847 OHU34_RS19575 WP_020129225.1 4400496..4401095(-) (recR) [Streptomyces sp. NBC_00080]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCGICRDPRRDPSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656847 OHU34_RS19575 WP_020129225.1 4400496..4401095(-) (recR) [Streptomyces sp. NBC_00080]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTACGGCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTCTGCGGCATCTGCCGCGACCCGCGCCGCGACCCGAGCGTC
ATCTGCGTCGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAGCGCACGCGTGAGTTCCGCGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCCATCGAAGGTGTCGGTCCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGGGACCTGGAATACGCGGACGAGGTGACCCT
CGGTCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457